rna-KK1_004910

Transcript Overview
Namerna-KK1_004910
Unique Namerna-KK1_004910_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length282
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_2-CM003604.1supercontigChr_2-CM003604.1:3027929..3028434 +Cajanus cajan Asha genome v1.0n/a
Chr_2-CM003604.1supercontigChr_2-CM003604.1:3027929..3028434 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_004910gene-KK1_004910_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004910rna-KK1_004910_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_004910_Cc_Asha_v1.0rna-KK1_004910_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3027929..3028063rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3027929..3028063Cajanus cajanexon
rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3027929..3028063rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3027929..3028063Cajanus cajanexon
rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3028288..3028434rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3028288..3028434Cajanus cajanexon
rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3028288..3028434rna-KK1_004910_Cc_Asha_v1.0-exon-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3028288..3028434Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3027929..3028063rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3027929..3028063Cajanus cajanCDS
rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3027929..3028063rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3027929..3028063Cajanus cajanCDS
rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3028288..3028434rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571082112:3028288..3028434Cajanus cajanCDS
rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3028288..3028434rna-KK1_004910_Cc_Asha_v1.0-CDS-Chr_2-CM003604.1_Cc_Asha_v1.0-1571847872:3028288..3028434Cajanus cajanCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_004910 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_004910_Cc_Asha_v1.0 ID=rna-KK1_004910_Cc_Asha_v1.0; Name=rna-KK1_004910; organism=Cajanus cajan; type=mRNA; length=282bp
ATGGCAAGTCCACCTTTGAATTCGGACCTTACATTCCCATCGGTAGATGT
TAACAAAGAACTCAATCCTGGGACAAACACACAGGTTCAGGTTGATCCTA
CATCTTTTGAGGTGGACGCCACCAAGGAAATGAAGGAACAAGATGAGGCC
AGACAAAAGAAAAATGAAAGAGAAAAAAAGGATGCATTGCAATCAATAAA
ATCAGCCATTATAATTTCAGGCATAGTTGTGGCTTTGGCAGGAGCTGCAT
TTGCTATAACCAAGAAATTAAGAGAAAAATGA
back to top

protein sequence of rna-KK1_004910_Cc_Asha_v1.0

>rna-KK1_004910_Cc_Asha_v1.0 ID=rna-KK1_004910_Cc_Asha_v1.0; Name=rna-KK1_004910_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=93bp
MASPPLNSDLTFPSVDVNKELNPGTNTQVQVDPTSFEVDATKEMKEQDEA
RQKKNEREKKDALQSIKSAIIISGIVVALAGAAFAITKKLREK
back to top

mRNA from alignment at Chr_2-CM003604.1:3027929..3028434+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_004910_Cc_Asha_v1.0 ID=rna-KK1_004910_Cc_Asha_v1.0; Name=rna-KK1_004910; organism=Cajanus cajan; type=mRNA; length=506bp; location=Sequence derived from: Chr_2-CM003604.1:3027929..3028434+ (Cajanus cajan
atggcAAGTCCACCTTTGAATTCGGACCTTACATTCCCATCGGTAGATGT
TAACAAAGAACTCAATCCTGGGACAAACACACAGGTTCAGGTTGATCCTA
CATCTTTTGAGGTGGACGCCACCAAGGAAATGAAGGTACATTCATTTTTC
ATACACAAGGGAGGATCATGTATGATGAAGATGTTATTGGAATacccatt
ttttcttctttcatttttttgtgtGGAATTATGAAACTTGTTTTAAAGAg
aatatgtatatgtgtgtgtatatatatatatatatatatatatatatata
taataaattgtattatGTATTGAATAGTGTTGTGTATATACTTTCTTGAT
TGGTTGCAGGAACAAGATGAGGccagacaaaagaaaaatgaaagagaaaa
aaaggatGCATTGCAATCAATAAAATCAGCCATTATAATTTCAGGCATAG
TTGTGGCTTTGGCAGGAGCTGCATTTGCTATAACCaagaaattaagagaa
aaatga
back to top

Coding sequence (CDS) from alignment at Chr_2-CM003604.1:3027929..3028434+

>rna-KK1_004910_Cc_Asha_v1.0 ID=rna-KK1_004910_Cc_Asha_v1.0; Name=rna-KK1_004910; organism=Cajanus cajan; type=CDS; length=564bp; location=Sequence derived from: Chr_2-CM003604.1:3027929..3028434+ (Cajanus cajan
atggcAAGTCCACCTTTGAATTCGGACCTTACATTCCCATCGGTAGATGT
TAACAAAGAACTCAATCCTGGGACAAACACACAGGTTCAGGTTGATCCTA
CATCTTTTGAGGTGGACGCCACCAAGGAAATGAAGatggcAAGTCCACCT
TTGAATTCGGACCTTACATTCCCATCGGTAGATGTTAACAAAGAACTCAA
TCCTGGGACAAACACACAGGTTCAGGTTGATCCTACATCTTTTGAGGTGG
ACGCCACCAAGGAAATGAAGGAACAAGATGAGGccagacaaaagaaaaat
gaaagagaaaaaaaggatGCATTGCAATCAATAAAATCAGCCATTATAAT
TTCAGGCATAGTTGTGGCTTTGGCAGGAGCTGCATTTGCTATAACCaaga
aattaagagaaaaatgaGAACAAGATGAGGccagacaaaagaaaaatgaa
agagaaaaaaaggatGCATTGCAATCAATAAAATCAGCCATTATAATTTC
AGGCATAGTTGTGGCTTTGGCAGGAGCTGCATTTGCTATAACCaagaaat
taagagaaaaatga
back to top