rna-KK1_024758

Transcript Overview
Namerna-KK1_024758
Unique Namerna-KK1_024758_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length219
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_024758gene-KK1_024758_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024758rna-KK1_024758_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_024758_Cc_Asha_v1.0rna-KK1_024758_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024758_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:947907..948125rna-KK1_024758_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:947907..948125Cajanus cajanCDS
rna-KK1_024758_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:947907..948125rna-KK1_024758_Cc_Asha_v1.0-CDS-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:947907..948125Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_024758_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:947907..948125rna-KK1_024758_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571847872:947907..948125Cajanus cajanexon
rna-KK1_024758_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:947907..948125rna-KK1_024758_Cc_Asha_v1.0-exon-Scaffold000330-KQ483414.1_Cc_Asha_v1.0-1571082112:947907..948125Cajanus cajanexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_024758 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 6..63
e-value: 1.5E-10
score: 41.6

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_024758_Cc_Asha_v1.0 ID=rna-KK1_024758_Cc_Asha_v1.0; Name=rna-KK1_024758; organism=Cajanus cajan; type=mRNA; length=219bp
ATGGTGTTGTCGCTAAGTCATGTTTGGAAGGCTTTGATTTTGAAACAGGC
CACTATTTTTGCTTGGCAACTGTTATTACAAGCACTACCTATTCGTAAAG
GGCTTGTTAGACGTGGTCTATTGTTGATAAATGAATCATGTCCACTTTGT
AATACTATGGATGAAGCGGTACAACACCATTTTTTTGCATTGTCAAATCT
CTTGCAATATATGGTATAA
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protein sequence of rna-KK1_024758_Cc_Asha_v1.0

>rna-KK1_024758_Cc_Asha_v1.0 ID=rna-KK1_024758_Cc_Asha_v1.0; Name=rna-KK1_024758_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=72bp
MVLSLSHVWKALILKQATIFAWQLLLQALPIRKGLVRRGLLLINESCPLC
NTMDEAVQHHFFALSNLLQYMV
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mRNA from alignment at Scaffold000330-KQ483414.1:947907..948125-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_024758_Cc_Asha_v1.0 ID=rna-KK1_024758_Cc_Asha_v1.0; Name=rna-KK1_024758; organism=Cajanus cajan; type=mRNA; length=219bp; location=Sequence derived from: Scaffold000330-KQ483414.1:947907..948125- (Cajanus cajan
ATGGTGTTGTCGCTAAGTCATGTTTGGAAGGCTTTGATTTTGAAACAGGC
CACTATTTTTGCTTGGCAACTGTTATTACAAGCACTACCTATTCGTAAAG
GGCTTGTTAGACGTGGTCTATTGTTGATAAATGAATCATGTCCACTTTGT
AATACTATGGATGAAGCGGTACAACACCATTTTTTTGCATTGTCAAATCT
CTTGCAATATATGGTATAA
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Coding sequence (CDS) from alignment at Scaffold000330-KQ483414.1:947907..948125-

>rna-KK1_024758_Cc_Asha_v1.0 ID=rna-KK1_024758_Cc_Asha_v1.0; Name=rna-KK1_024758; organism=Cajanus cajan; type=CDS; length=438bp; location=Sequence derived from: Scaffold000330-KQ483414.1:947907..948125- (Cajanus cajan
ATGGTGTTGTCGCTAAGTCATGTTTGGAAGGCTTTGATTTTGAAACAGGC
CACTATTTTTGCTTGGCAACTGTTATTACAAGCACTACCTATTCGTAAAG
GGCTTGTTAGACGTGGTCTATTGTTGATAAATGAATCATGTCCACTTTGT
AATACTATGGATGAAGCGGTACAACACCATTTTTTTGCATTGTCAAATCT
CTTGCAATATATGGTATAAATGGTGTTGTCGCTAAGTCATGTTTGGAAGG
CTTTGATTTTGAAACAGGCCACTATTTTTGCTTGGCAACTGTTATTACAA
GCACTACCTATTCGTAAAGGGCTTGTTAGACGTGGTCTATTGTTGATAAA
TGAATCATGTCCACTTTGTAATACTATGGATGAAGCGGTACAACACCATT
TTTTTGCATTGTCAAATCTCTTGCAATATATGGTATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf