Vigun11g050500.1

Transcript Overview
NameVigun11g050500.1
Unique NameVigun11g050500.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length492
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:8374994..8375485 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g050500Vigun11g050500_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g050500.1Vigun11g050500.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun11g050500.1_Vu_IT97K-499-35_v1.1Vigun11g050500.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g050500.1.v1.1.five_prime_UTR.1Vigun11g050500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g050500.1.v1.1.CDS.1Vigun11g050500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g050500.1.v1.1.three_prime_UTR.1Vigun11g050500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun11g050500.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g050500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g050500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g050500.1; organism=Vigna unguiculata; type=mRNA; length=492bp
TATTTCAATTAACTAATGGAAATAGCTCCTCTGTTGAGTCCTTAAGCACA
AGTTATAGTTTCTCCATTTTCAGCTTGTGCTTTGGTATTTAGGCCATAAA
CTATTGAATGTGATGACAAGGCAGAAATGAAGATGGTAGATGAAGCAACT
ATGTCATCAAGGTCATTTTCTGGAAGAGTTCGTGATGACAAGGCTAACAG
AAGTGGAAGGAGTATGGTTCTTCCTTTTCAACCTTTATCCTTCACTTTTG
ATGAGATCAAATATTCTATAGATATTCCACATGTATTTTATTTTAGTTCC
TGTACTATGTTACTATTTTAGTTTGAGCTTGATTCTTTCAGTTTAATGTT
TGGATTAGTTCTGGTATATGTTTTGCTCCTTCCATCAATTTATCTCACCA
ACAATAATATTTTTAGCTAACTTGACAAACAATTTCAATGATGTTTCTAA
GTTAATATTTCATATCTAAATTCTCCTGTGTTATGATAAAGT
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protein sequence of Vigun11g050500.1_Vu_IT97K-499-35_v1.1

>Vigun11g050500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g050500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g050500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=65bp
MKMVDEATMSSRSFSGRVRDDKANRSGRSMVLPFQPLSFTFDEIKYSIDI
PHVFYFSSCTMLLF*
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mRNA from alignment at Vu11:8374994..8375485+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g050500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g050500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g050500.1; organism=Vigna unguiculata; type=mRNA; length=492bp; location=Sequence derived from: Vu11:8374994..8375485+ (Vigna unguiculata
TATTTCAATTAACTAATGGAAATAGCTCCTCTGTTGAGTCCTTAAGCACA
AGTTATAGTTTCTCCATTTTCAGCTTGTGCTTTGGTATTTAGGCCATAAA
CTATTGAATGTGATGACAAGGCAGAAATGAAGATGGTAGATGAAGCAACT
ATGTCATCAAGGTCATTTTCTGGAAGAGTTCGTGATGACAAGGCTAACAG
AAGTGGAAGGAGTATGGTTCTTCCTTTTCAACCTTTATCCTTCACTTTTG
ATGAGATCAAATATTCTATAGATATTCCACATGTATTTTATTTTAGTTCC
TGTACTATGTTACTATTTTAGTTTGAGCTTGATTCTTTCAGTTTAATGTT
TGGATTAGTTCTGGTATATGTTTTGCTCCTTCCATCAATTTATCTCACCA
ACAATAATATTTTTAGCTAACTTGACAAACAATTTCAATGATGTTTCTAA
GTTAATATTTCATATCTAAATTCTCCTGTGTTATGATAAAGT
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Coding sequence (CDS) from alignment at Vu11:8374994..8375485+

>Vigun11g050500.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g050500.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g050500.1; organism=Vigna unguiculata; type=CDS; length=195bp; location=Sequence derived from: Vu11:8374994..8375485+ (Vigna unguiculata
ATGAAGATGGTAGATGAAGCAACTATGTCATCAAGGTCATTTTCTGGAAG
AGTTCGTGATGACAAGGCTAACAGAAGTGGAAGGAGTATGGTTCTTCCTT
TTCAACCTTTATCCTTCACTTTTGATGAGATCAAATATTCTATAGATATT
CCACATGTATTTTATTTTAGTTCCTGTACTATGTTACTATTTTAG
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