Vigun11g087900.1

Transcript Overview
NameVigun11g087900.1
Unique NameVigun11g087900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1782
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:26297566..26299347 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g087900Vigun11g087900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g087900.1Vigun11g087900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun11g087900.1_Vu_IT97K-499-35_v1.1Vigun11g087900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g087900.1.v1.1.five_prime_UTR.1Vigun11g087900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g087900.1.v1.1.CDS.1Vigun11g087900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g087900.1.v1.1.three_prime_UTR.1Vigun11g087900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun11g087900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g087900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g087900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g087900.1; organism=Vigna unguiculata; type=mRNA; length=1782bp
ATAAAAGCGTGTTATATACGTGTTGTTTCTGAGAATGTGAACTTGAAGAA
AAATATAAGGTACGTATATGATCTAAAGTTCTTATTGGTTGACTTGTCAA
AGATACTGTAATTCCAAATTTATAAATATAGCCAACACGCATGTGAGATA
ATGTCATTACATAGAGATTTATAGTGAAAAGATAAGATGGCTAGAGAGTT
TGTTGTTGTTAATGGAAATGAAGGTGAAGAAGGTTTGGTGCTTCACTCTG
CACCTATATTTTTGTTTCTTATGATTATTGCTTCTCTTTCTATCATTTCA
ATCATCATATTTGCATGTGGAGACGACAACAAAAGTACCAAGAATACTGA
ACATCGCGGTGCtggatgtggtgttggatgtggcgctggatgtggCGGCG
GTTAAGTGTCATGACTCATGAGTAGTATATAAAAGAAGTTTGTGTTTGAA
AAATAATACTTTTCCTTCTTACTATTTTTCTACAAATTTAGTGTACCTTT
GTAACACTATATCGACAAAGAAGCAATATCAATTTTTTATTTTATTTTCC
TGTACTTATCATTCCATATGAATTTTTCTAACACTTGTAAGAGTTTGAGG
AAGGATTATGCCATTTTTACTAGCTCGGAAGAAATCTTGAAAGTGCCGCA
AACTTTTCATTAAGGTGTTGGACTTCTTTTAAGTTCAAACACCGAAAAGG
CAACGAATTTAATGATTATAGTAAAGCAACGAATTTTTCTCCTCTAACGG
TAAAAGCTCACTTTTCCATATTTTGGCTCTTATTATATGGCCTAACATGG
GAAAAAACTTTTTTCTAGATTATGAGGATGGCCTTGAGCCTTTTTAACAA
CCATCACATATTTCCGTCGTGTTTACTCATACTTCCATGGTCTTACTCAT
GAGCTCCTTATACACTTTATCCATGAGTAGAGGAAATTGAGCAACTAATA
ATTGAGTTTACTCTTAACTAATATAAGTATTTTTAGGGCATGGCTTATTT
GAATCTAGGTAAGTAATTGATACATATCCTTCACTTTTCATTTGATTTTT
AATCTAACCATATTTGCAAGTCACCTGGTGTATGTAATTTTCCTTATGAA
GTCAACTTTTAGTAATTAGTTGACTTCATTAATGACGGTTAAACCTCTCT
CTTCATGTTTTCTTTTCCTCTGGACCATTGGCTTGGCCTAACGAAGGATT
TCAGCTTATAAGACATTAAATGTGTTAATTCCTGACATATATGCAACGCT
TCATGCTAAGAGATAAACTTTCTGTGCCAAAATTCATTAGATATGTTCAT
TGAGCAAGCAATTTGATATTCGACACTAGCTTGTGTGATATCCAAGTTAC
AAACTTGTATTGACCATCAAATGTGAGATGACTATCTTAAAATTCAGCAT
CTGGGTCGAGGTCAACCCCTTCTTTGAATGAGTTTGAGTGATGTTGTCCT
AACATGGTGCCTTGAGGATTTACTTTGATGGTGATGATAAGGCAACATCA
TTGCCATGTTTGGGATGGATACAACCACTCCATGGTAGTCTAGTTTTTGG
CATCCAATAAGGGTATTGAGCCATGAGAGTTTGTTGTGCCTTACTAGTAT
TGGAGGTTGTTAATAAATCAACATAGCTTTTGGTGTGTATTCTTTCTTTG
TCTAACTCAAGTAGTGGATATGATTTTATGAGTGTGTTGGGGACACCAAT
TTTCAAAAATGTTGACGAATAAAGTACATTATCAAGCTTCCTTGGTTTAT
GAGGACTTTGTTAACATACCAATTAATTATGG
back to top

protein sequence of Vigun11g087900.1_Vu_IT97K-499-35_v1.1

>Vigun11g087900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g087900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g087900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=73bp
MAREFVVVNGNEGEEGLVLHSAPIFLFLMIIASLSIISIIIFACGDDNKS
TKNTEHRGAGCGVGCGAGCGGG*
back to top

mRNA from alignment at Vu11:26297566..26299347+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g087900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g087900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g087900.1; organism=Vigna unguiculata; type=mRNA; length=1782bp; location=Sequence derived from: Vu11:26297566..26299347+ (Vigna unguiculata
ATAAAAGCGTGTTATATACGTGTTGTTTCTGAGAATGTGAACTTGAAGAA
AAATATAAGGTACGTATATGATCTAAAGTTCTTATTGGTTGACTTGTCAA
AGATACTGTAATTCCAAATTTATAAATATAGCCAACACGCATGTGAGATA
ATGTCATTACATAGAGATTTATAGTGAAAAGATAAGATGGCTAGAGAGTT
TGTTGTTGTTAATGGAAATGAAGGTGAAGAAGGTTTGGTGCTTCACTCTG
CACCTATATTTTTGTTTCTTATGATTATTGCTTCTCTTTCTATCATTTCA
ATCATCATATTTGCATGTGGAGACGACAACAAAAGTACCAAGAATACTGA
ACATCGCGGTGCTGGATGTGGTGTTGGATGTGGCGCTGGATGTGGCGGCG
GTTAAGTGTCATGACTCATGAGTAGTATATAAAAGAAGTTTGTGTTTGAA
AAATAATACTTTTCCTTCTTACTATTTTTCTACAAATTTAGTGTACCTTT
GTAACACTATATCGACAAAGAAGCAATATCAATTTTTTATTTTATTTTCC
TGTACTTATCATTCCATATGAATTTTTCTAACACTTGTAAGAGTTTGAGG
AAGGATTATGCCATTTTTACTAGCTCGGAAGAAATCTTGAAAGTGCCGCA
AACTTTTCATTAAGGTGTTGGACTTCTTTTAAGTTCAAACACCGAAAAGG
CAACGAATTTAATGATTATAGTAAAGCAACGAATTTTTCTCCTCTAACGG
TAAAAGCTCACTTTTCCATATTTTGGCTCTTATTATATGGCCTAACATGG
GAAAAAACTTTTTTCTAGATTATGAGGATGGCCTTGAGCCTTTTTAACAA
CCATCACATATTTCCGTCGTGTTTACTCATACTTCCATGGTCTTACTCAT
GAGCTCCTTATACACTTTATCCATGAGTAGAGGAAATTGAGCAACTAATA
ATTGAGTTTACTCTTAACTAATATAAGTATTTTTAGGGCATGGCTTATTT
GAATCTAGGTAAGTAATTGATACATATCCTTCACTTTTCATTTGATTTTT
AATCTAACCATATTTGCAAGTCACCTGGTGTATGTAATTTTCCTTATGAA
GTCAACTTTTAGTAATTAGTTGACTTCATTAATGACGGTTAAACCTCTCT
CTTCATGTTTTCTTTTCCTCTGGACCATTGGCTTGGCCTAACGAAGGATT
TCAGCTTATAAGACATTAAATGTGTTAATTCCTGACATATATGCAACGCT
TCATGCTAAGAGATAAACTTTCTGTGCCAAAATTCATTAGATATGTTCAT
TGAGCAAGCAATTTGATATTCGACACTAGCTTGTGTGATATCCAAGTTAC
AAACTTGTATTGACCATCAAATGTGAGATGACTATCTTAAAATTCAGCAT
CTGGGTCGAGGTCAACCCCTTCTTTGAATGAGTTTGAGTGATGTTGTCCT
AACATGGTGCCTTGAGGATTTACTTTGATGGTGATGATAAGGCAACATCA
TTGCCATGTTTGGGATGGATACAACCACTCCATGGTAGTCTAGTTTTTGG
CATCCAATAAGGGTATTGAGCCATGAGAGTTTGTTGTGCCTTACTAGTAT
TGGAGGTTGTTAATAAATCAACATAGCTTTTGGTGTGTATTCTTTCTTTG
TCTAACTCAAGTAGTGGATATGATTTTATGAGTGTGTTGGGGACACCAAT
TTTCAAAAATGTTGACGAATAAAGTACATTATCAAGCTTCCTTGGTTTAT
GAGGACTTTGTTAACATACCAATTAATTATGG
back to top

Coding sequence (CDS) from alignment at Vu11:26297566..26299347+

>Vigun11g087900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g087900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g087900.1; organism=Vigna unguiculata; type=CDS; length=219bp; location=Sequence derived from: Vu11:26297566..26299347+ (Vigna unguiculata
ATGGCTAGAGAGTTTGTTGTTGTTAATGGAAATGAAGGTGAAGAAGGTTT
GGTGCTTCACTCTGCACCTATATTTTTGTTTCTTATGATTATTGCTTCTC
TTTCTATCATTTCAATCATCATATTTGCATGTGGAGACGACAACAAAAGT
ACCAAGAATACTGAACATCGCGGTGCTGGATGTGGTGTTGGATGTGGCGC
TGGATGTGGCGGCGGTTAA
back to top