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Transcript Overview
Name | Vigun11g124800.1 |
Unique Name | Vigun11g124800.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1556 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun11g124800.1 | Vigun11g124800.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun11g124800.1_Vu_IT97K-499-35_v1.1 | Vigun11g124800.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun11g124800.1.v1.1.CDS.2 | Vigun11g124800.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun11g124800.1.v1.1.CDS.1 | Vigun11g124800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun11g124800.1.v1.1.three_prime_UTR.1 | Vigun11g124800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun11g124800.1.v1.1.five_prime_UTR.1 | Vigun11g124800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Homology
BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.187e-56 Identity = 119/286 (41.61%), Postives = 172/286 (60.14%), Query Frame = 1
Query: 58 ALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVDALEPNEMIPTTVKFTR--KEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMV---RERXXXXXXXXXXXXX--------XXXXHVREVNLVMEDTEGRQLSGKEGVEILQRGMESGVRKKVDAVREKERFEKF 876
A+ D++ ++ILTRLD ++LA+ + S ++ C+ E LWRQ C+ATWPS D + +IST P GHR+ +SD+FP L H + P ELISAVDI+++ +FSRV ET WFL SP+ VD +EP E+IPT V T K++ W +EE+LS+SWI++DPT KRA +VS+R+ V RHWLT EV V +++ V ++R + V + +REV+LV ED +GR L GK +EIL M G++++ A E+E EK+
Sbjct: 23 AVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEH-DVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAM--GMKRRFRAGGEEEGKEKY 305
BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.649e-52 Identity = 121/294 (41.16%), Postives = 183/294 (62.24%), Query Frame = 1
Query: 40 NTSIFAALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKD---WFLSSPLWVDALEPNEMIPTTVKFTRKE-EKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMVRERXXXXXXXXXXXXXX---------XXXHVREVNLVMEDTEGRQLSGKEGVEILQRGMESGVR--KKVDAVREKERFEKF 876
N + LH DII ILTRLD TLAS A+ SS + LCT+E LW+++ TWPS+ DP + IS+ P G+RS ++D++P H + PP LISAVD+Y++G ++S+V+ +ET+K WFLSSP VD L+P E + T +++ + E W+K +EES+ ++WI++DP KRA N+SSR+AV ARR+WLT ++E+ ++ + E + V+CG GE+HVR+V L +ED EG+ + G++ + ILQ G+ G R K + R KER+E++
Sbjct: 8 NGDSISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSYPFTEH---TWQSEKHDPPTGLISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQ-GLLDGKRSCKDDEERRAKERYEEY 297
BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 3.777e-45 Identity = 110/289 (38.06%), Postives = 168/289 (58.13%), Query Frame = 1
Query: 13 TSPPSETTQNTSIFAALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVDALEPNEMIPTTVKFTRKEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMVRERXXXXXXXXXXXXXXXXXHVREVNLVMEDTEGRQLSGKEGVEILQRGME----SGVRKKVDAVREKERF 867
+S S +T T + + +H DII +HILTRLD ATLAS + SS +H L + E LW +IC +TWPS GG RS +SDA+ + + P ELISAVD++++G+ +FSRV + ET WF SSPL +D ++ + + T +K ++ E + +E+ L++SWIV+DP GKRA N+SS R V +R+W++ EVE +A + +T E+HVREV+L +E EG L+G++ + IL+ ME +G R++V++ + E F
Sbjct: 4 SSSFSPSTTVTDLISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSC------------SGGSRSFFSDAYSMVE--TAGTVSDLDRPFPELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQFATVV----GAVECVITVVTCGEEEMHVREVSLKVEKMEGTHLNGRDSLVILRSVMEGKRVNGSRREVESKKRHEEF 274
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | GENE3D | 1.20.1280.50 | | coord: 7..105 e-value: 6.0E-9 score: 37.7 |
IPR036047 | F-box-like domain superfamily | SUPERFAMILY | 81383 | F-box domain | coord: 8..87 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=mRNA; length=1556bp CTTCCATGAGAAGTGCCGAAAGCTGAATTGGACTATTGGACTTTCACAGC CACCATTGACTTGACTCGTGTTTTTCATTCATTCATTTCCAATATTTTCC TTTCATACTTTCCGTTAGGATTCCCTCAACACATCTTCACTCTCTTAAGT CTATTGCACGTGCTTTCTTCCCACGCGAAGAAACTGAGAATCTGGAACGC AACAACCATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACA CTTCAATCTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTC ACGCGCCTCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCT CATGCACCGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCG CCACGTGGCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACC ATTCCCGGTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCA TCACTTCTCTCTGCATCCccgccgcacgccgccgccaccgccAGAGGAGC TTATCTCCGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGC GTGAAACGCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTG GGTGGACGCTCTCGAGCCCAACGAGATGATTCCCACGACGGTGAAGTTTA CGAGGAAGGAAGAGAAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTG AGCTGGATTGTGGTGGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAG CCGGAGGGCGGTGTTGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGG TGTTGTACGCGGCGGAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAG GTCACGTGCGGTGGGAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAA TCTGGTTATGGAGGACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTG TGGAGATTCTGCAGAGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGAT GCGGTGAGGGAGAAGGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGA GAGAAGAGAAAGAAAGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAA CACTCTTCGCTTTGCTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTC TAACCTTTTAACTCTTCATCGTATACCTTCGTTGTACAGTCATTGGAGAG GAAAACACCGTTTGTTTGAGGGATTGTTCACCATGCCCAACACTTTCTCT ATGTCATCGTCCGGTTGACGGTTGAGGAAAGAGTGCACTAAGTAAAACGG TTCGCTATTGGGCTTACTGACCCAGGTTCAAATCAGAGAAGCCCAATAAT CGCCCAAATTAGAACCCAATTATTTTATCCAACCTATACTTAAAAAAGTT CACAATGTACAATTTTGTAGTATCTTCGTTACCAAATAAATTGAGCCACG CTTAGTACTATAAATTGATCTACACAATAAAGTTATGTAGTATAAACTAC AAATTA back to topprotein sequence of Vigun11g124800.1_Vu_IT97K-499-35_v1.1 >Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=332bp MPDTTSPPSETTQNTSIFAALHPDIIHAHILTRLDAATLASAASVSSLMH RLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHF SLHPRRTPPPPPEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVD ALEPNEMIPTTVKFTRKEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRR AVLARRHWLTREVEVLYAAEMVRERVQCVVKVTCGGKVGGEVHVREVNLV MEDTEGRQLSGKEGVEILQRGMESGVRKKVDAVREKERFEKFTCLMKERR ERKFRREKARDLLSTLFALLLSLFFCFLLGF* back to topmRNA from alignment at Vu11:33211889..33214180- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=mRNA; length=2292bp; location=Sequence derived from: Vu11:33211889..33214180- (Vigna unguiculata CTTCCATGAGAAGTGCCGAAAGCTGAATTGGACTATTGGACTTTCACAGC
CACCATTGACTTGACTCGTGTTTTTCATTCATTCATTTCCAATATTTTCC
TTTCATACTTTCCGTTAGGATTCCCTCAACACATCTTCACTCTCTTAAGT
CTATTGCACGTGCTTTCTTCCCACGCGAAGAAACTGAGAATCTGGAACGC
AACAACCATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACA
CTTCAATCTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTC
ACGCGCCTCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCT
CATGCACCGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCG
CCACGTGGCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACC
ATTCCCGGTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCA
TCACTTCTCTCTGCATCCCCGCCGCACGCCGCCGCCACCGCCAGAGGAGC
TTATCTCCGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGC
GTGAAACGCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTG
GGTGGACGCTCTCGAGCCCAACGAGGTAGTTAAACATACTTTTAATACCA
GCTCGATCTCTAAACACAACATTTGAACTAACTAAGAGCTATTAAGAAAG
TTTATTAATTAATTATGATTGTTGTCTTAGGAAATACTAATAAAGAATCA
TTTATAAATAGATTAATGGAAATAGTAATTTTATGTTATTAATATCAAGT
CTTAATTAATGTGCATGTATTTTAAGGCGTGCATGAAAAATAATAATTAG
GAATGTACTAAAAAGTTAAGACAACTATTTAAATTCTTTACATGACAACT
ATAATAGGGCAAATAAAGTTGTTACAATAATTTGTTACAACTATAATTGT
GAATACAAAAATGAGAGAGGAACAAAATTGTAATTATTATTTTTATTTTT
AAGCTAGACTCAATTTTTCATTGGTAAAAGAATAATTCGTAACATTTATA
ATTTACGAATTCAACTAATTAATATTGTTTTAATGAAAAATAATTAAAAT
AAAAGACAATTAAATAATAGTCAGATAAAAAAATAAGAAAATTGCAAAAG
AACACGTAAAGATTACGGAAGTAATTTTTTTTACGTAACTAGAATTTATT
AAACGTTATAATCTTTTATTTATTGCCATCGCTCCTCTTGTAATTTTATT
TGTAATTTTATTGGAAGTCCAAACAAAAGAATAACAATAGATAAAATATT
TTTTTATCAGTAATTGGTGACACAGTTAGGGAAGAGAATTGATGGTTGAT
TTTTGTTGCAGATGATTCCCACGACGGTGAAGTTTACGAGGAAGGAAGAG
AAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTGAGCTGGATTGTGGT
GGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAGCCGGAGGGCGGTGT
TGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGGTGTTGTACGCGGCG
GAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAGGTCACGTGCGGTGG
GAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAATCTGGTTATGGAGG
ACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTGTGGAGATTCTGCAG
AGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGATGCGGTGAGGGAGAA
GGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGAGAGAAGAGAAAGAA
AGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAACACTCTTCGCTTTG
CTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTCTAACCTTTTAACTC
TTCATCGTATACCTTCGTTGTACAGTCATTGGAGAGGAAAACACCGTTTG
TTTGAGGGATTGTTCACCATGCCCAACACTTTCTCTATGTCATCGTCCGG
TTGACGGTTGAGGAAAGAGTGCACTAAGTAAAACGGTTCGCTATTGGGCT
TACTGACCCAGGTTCAAATCAGAGAAGCCCAATAATCGCCCAAATTAGAA
CCCAATTATTTTATCCAACCTATACTTAAAAAAGTTCACAATGTACAATT
TTGTAGTATCTTCGTTACCAAATAAATTGAGCCACGCTTAGTACTATAAA
TTGATCTACACAATAAAGTTATGTAGTATAAACTACAAATTA back to topCoding sequence (CDS) from alignment at Vu11:33211889..33214180- >Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=CDS; length=996bp; location=Sequence derived from: Vu11:33211889..33214180- (Vigna unguiculata ATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACACTTCAAT CTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTCACGCGCC TCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCTCATGCAC CGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCGCCACGTG GCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACCATTCCCG GTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCATCACTTC TCTCTGCATCCCCGCCGCACGCCGCCGCCACCGCCAGAGGAGCTTATCTC CGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGCGTGAAAC GCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTGGGTGGAC GCTCTCGAGCCCAACGAGATGATTCCCACGACGGTGAAGTTTACGAGGAA GGAAGAGAAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTGAGCTGGA TTGTGGTGGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAGCCGGAGG GCGGTGTTGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGGTGTTGTA CGCGGCGGAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAGGTCACGT GCGGTGGGAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAATCTGGTT ATGGAGGACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTGTGGAGAT TCTGCAGAGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGATGCGGTGA GGGAGAAGGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGAGAGAAGA GAAAGAAAGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAACACTCTT CGCTTTGCTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR036047 | F-box-like_dom_sf |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
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