Vigun11g124800.1

Transcript Overview
NameVigun11g124800.1
Unique NameVigun11g124800.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1556
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:33211889..33214180 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g124800Vigun11g124800_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g124800.1Vigun11g124800.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun11g124800.1_Vu_IT97K-499-35_v1.1Vigun11g124800.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g124800.1.v1.1.CDS.2Vigun11g124800.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun11g124800.1.v1.1.CDS.1Vigun11g124800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g124800.1.v1.1.three_prime_UTR.1Vigun11g124800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g124800.1.v1.1.five_prime_UTR.1Vigun11g124800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
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BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.187e-56
Identity = 119/286 (41.61%), Postives = 172/286 (60.14%), Query Frame = 1 
Query:   58 ALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVDALEPNEMIPTTVKFTR--KEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMV---RERXXXXXXXXXXXXX--------XXXXHVREVNLVMEDTEGRQLSGKEGVEILQRGMESGVRKKVDAVREKERFEKF 876
            A+  D++ ++ILTRLD ++LA+ +   S ++  C+ E LWRQ C+ATWPS  D   + +IST P GHR+ +SD+FP L H  +     P     ELISAVDI+++   +FSRV   ET   WFL SP+ VD +EP E+IPT V  T   K++ W   +EE+LS+SWI++DPT KRA +VS+R+ V   RHWLT EV V +++  V   ++R + V                    + +REV+LV ED +GR L GK  +EIL   M  G++++  A  E+E  EK+
Sbjct:   23 AVSSDVLRSNILTRLDGSSLAALSCTCSNLNSFCSDESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEH-DVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAM--GMKRRFRAGGEEEGKEKY 305
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BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.649e-52
Identity = 121/294 (41.16%), Postives = 183/294 (62.24%), Query Frame = 1 
Query:   40 NTSIFAALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKD---WFLSSPLWVDALEPNEMIPTTVKFTRKE-EKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMVRERXXXXXXXXXXXXXX---------XXXHVREVNLVMEDTEGRQLSGKEGVEILQRGMESGVR--KKVDAVREKERFEKF 876
            N    + LH DII   ILTRLD  TLAS A+ SS +  LCT+E LW+++   TWPS+ DP   + IS+ P G+RS ++D++P   H     +     PP  LISAVD+Y++G  ++S+V+ +ET+K    WFLSSP  VD L+P E + T +++   + E W+K +EES+ ++WI++DP  KRA N+SSR+AV ARR+WLT ++E+ ++  +  E  +    V+CG             GE+HVR+V L +ED EG+ + G++ + ILQ G+  G R  K  +  R KER+E++
Sbjct:    8 NGDSISTLHSDIIQTQILTRLDGPTLASTATTSSYLQTLCTEEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSYPFTEH---TWQSEKHDPPTGLISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQ-GLLDGKRSCKDDEERRAKERYEEY 297
[Close]
BLAST of Vigun11g124800.1 vs. DB:Swiss
Match: FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.777e-45
Identity = 110/289 (38.06%), Postives = 168/289 (58.13%), Query Frame = 1 
Query:   13 TSPPSETTQNTSIFAALHPDIIHAHIXXXXXXXXXXXXXXXXXXMHRLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHFSLHXXXXXXXXXEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVDALEPNEMIPTTVKFTRKEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRRAVLARRHWLTREVEVLYAAEMVRERXXXXXXXXXXXXXXXXXHVREVNLVMEDTEGRQLSGKEGVEILQRGME----SGVRKKVDAVREKERF 867
            +S  S +T  T + + +H DII +HILTRLD ATLAS +  SS +H L + E LW +IC +TWPS              GG RS +SDA+  +   +         P  ELISAVD++++G+ +FSRV + ET   WF SSPL +D ++  + + T +K  ++ E   + +E+ L++SWIV+DP GKRA N+SS R V  +R+W++ EVE  +A  +          +T       E+HVREV+L +E  EG  L+G++ + IL+  ME    +G R++V++ +  E F
Sbjct:    4 SSSFSPSTTVTDLISTVHDDIIESHILTRLDGATLASVSCASSHLHHLASNEILWSKICRSTWPSC------------SGGSRSFFSDAYSMVE--TAGTVSDLDRPFPELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTEDTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQFATVV----GAVECVITVVTCGEEEMHVREVSLKVEKMEGTHLNGRDSLVILRSVMEGKRVNGSRREVESKKRHEEF 274
The following BLAST results are available for this feature:
BLAST of Vigun11g124800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
FB346_ARATH1.187e-5641.61F-box protein At3g44326 OS=Arabidopsis thaliana OX... [more]
FB119_ARATH2.649e-5241.16F-box protein At2g27310 OS=Arabidopsis thaliana OX... [more]
FB322_ARATH3.777e-4538.06Probable F-box protein At2g36090 OS=Arabidopsis th... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 7..105
e-value: 6.0E-9
score: 37.7
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 8..87

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=mRNA; length=1556bp
CTTCCATGAGAAGTGCCGAAAGCTGAATTGGACTATTGGACTTTCACAGC
CACCATTGACTTGACTCGTGTTTTTCATTCATTCATTTCCAATATTTTCC
TTTCATACTTTCCGTTAGGATTCCCTCAACACATCTTCACTCTCTTAAGT
CTATTGCACGTGCTTTCTTCCCACGCGAAGAAACTGAGAATCTGGAACGC
AACAACCATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACA
CTTCAATCTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTC
ACGCGCCTCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCT
CATGCACCGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCG
CCACGTGGCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACC
ATTCCCGGTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCA
TCACTTCTCTCTGCATCCccgccgcacgccgccgccaccgccAGAGGAGC
TTATCTCCGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGC
GTGAAACGCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTG
GGTGGACGCTCTCGAGCCCAACGAGATGATTCCCACGACGGTGAAGTTTA
CGAGGAAGGAAGAGAAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTG
AGCTGGATTGTGGTGGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAG
CCGGAGGGCGGTGTTGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGG
TGTTGTACGCGGCGGAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAG
GTCACGTGCGGTGGGAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAA
TCTGGTTATGGAGGACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTG
TGGAGATTCTGCAGAGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGAT
GCGGTGAGGGAGAAGGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGA
GAGAAGAGAAAGAAAGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAA
CACTCTTCGCTTTGCTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTC
TAACCTTTTAACTCTTCATCGTATACCTTCGTTGTACAGTCATTGGAGAG
GAAAACACCGTTTGTTTGAGGGATTGTTCACCATGCCCAACACTTTCTCT
ATGTCATCGTCCGGTTGACGGTTGAGGAAAGAGTGCACTAAGTAAAACGG
TTCGCTATTGGGCTTACTGACCCAGGTTCAAATCAGAGAAGCCCAATAAT
CGCCCAAATTAGAACCCAATTATTTTATCCAACCTATACTTAAAAAAGTT
CACAATGTACAATTTTGTAGTATCTTCGTTACCAAATAAATTGAGCCACG
CTTAGTACTATAAATTGATCTACACAATAAAGTTATGTAGTATAAACTAC
AAATTA
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protein sequence of Vigun11g124800.1_Vu_IT97K-499-35_v1.1

>Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=332bp
MPDTTSPPSETTQNTSIFAALHPDIIHAHILTRLDAATLASAASVSSLMH
RLCTQEDLWRQICTATWPSLRDPIARRVISTIPGGHRSIYSDAFPSLHHF
SLHPRRTPPPPPEELISAVDIYFQGRPVFSRVKRIETQKDWFLSSPLWVD
ALEPNEMIPTTVKFTRKEEKWLKQVEESLSVSWIVVDPTGKRATNVSSRR
AVLARRHWLTREVEVLYAAEMVRERVQCVVKVTCGGKVGGEVHVREVNLV
MEDTEGRQLSGKEGVEILQRGMESGVRKKVDAVREKERFEKFTCLMKERR
ERKFRREKARDLLSTLFALLLSLFFCFLLGF*
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mRNA from alignment at Vu11:33211889..33214180-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=mRNA; length=2292bp; location=Sequence derived from: Vu11:33211889..33214180- (Vigna unguiculata
CTTCCATGAGAAGTGCCGAAAGCTGAATTGGACTATTGGACTTTCACAGC
CACCATTGACTTGACTCGTGTTTTTCATTCATTCATTTCCAATATTTTCC
TTTCATACTTTCCGTTAGGATTCCCTCAACACATCTTCACTCTCTTAAGT
CTATTGCACGTGCTTTCTTCCCACGCGAAGAAACTGAGAATCTGGAACGC
AACAACCATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACA
CTTCAATCTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTC
ACGCGCCTCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCT
CATGCACCGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCG
CCACGTGGCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACC
ATTCCCGGTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCA
TCACTTCTCTCTGCATCCCCGCCGCACGCCGCCGCCACCGCCAGAGGAGC
TTATCTCCGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGC
GTGAAACGCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTG
GGTGGACGCTCTCGAGCCCAACGAGGTAGTTAAACATACTTTTAATACCA
GCTCGATCTCTAAACACAACATTTGAACTAACTAAGAGCTATTAAGAAAG
TTTATTAATTAATTATGATTGTTGTCTTAGGAAATACTAATAAAGAATCA
TTTATAAATAGATTAATGGAAATAGTAATTTTATGTTATTAATATCAAGT
CTTAATTAATGTGCATGTATTTTAAGGCGTGCATGAAAAATAATAATTAG
GAATGTACTAAAAAGTTAAGACAACTATTTAAATTCTTTACATGACAACT
ATAATAGGGCAAATAAAGTTGTTACAATAATTTGTTACAACTATAATTGT
GAATACAAAAATGAGAGAGGAACAAAATTGTAATTATTATTTTTATTTTT
AAGCTAGACTCAATTTTTCATTGGTAAAAGAATAATTCGTAACATTTATA
ATTTACGAATTCAACTAATTAATATTGTTTTAATGAAAAATAATTAAAAT
AAAAGACAATTAAATAATAGTCAGATAAAAAAATAAGAAAATTGCAAAAG
AACACGTAAAGATTACGGAAGTAATTTTTTTTACGTAACTAGAATTTATT
AAACGTTATAATCTTTTATTTATTGCCATCGCTCCTCTTGTAATTTTATT
TGTAATTTTATTGGAAGTCCAAACAAAAGAATAACAATAGATAAAATATT
TTTTTATCAGTAATTGGTGACACAGTTAGGGAAGAGAATTGATGGTTGAT
TTTTGTTGCAGATGATTCCCACGACGGTGAAGTTTACGAGGAAGGAAGAG
AAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTGAGCTGGATTGTGGT
GGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAGCCGGAGGGCGGTGT
TGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGGTGTTGTACGCGGCG
GAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAGGTCACGTGCGGTGG
GAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAATCTGGTTATGGAGG
ACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTGTGGAGATTCTGCAG
AGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGATGCGGTGAGGGAGAA
GGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGAGAGAAGAGAAAGAA
AGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAACACTCTTCGCTTTG
CTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTCTAACCTTTTAACTC
TTCATCGTATACCTTCGTTGTACAGTCATTGGAGAGGAAAACACCGTTTG
TTTGAGGGATTGTTCACCATGCCCAACACTTTCTCTATGTCATCGTCCGG
TTGACGGTTGAGGAAAGAGTGCACTAAGTAAAACGGTTCGCTATTGGGCT
TACTGACCCAGGTTCAAATCAGAGAAGCCCAATAATCGCCCAAATTAGAA
CCCAATTATTTTATCCAACCTATACTTAAAAAAGTTCACAATGTACAATT
TTGTAGTATCTTCGTTACCAAATAAATTGAGCCACGCTTAGTACTATAAA
TTGATCTACACAATAAAGTTATGTAGTATAAACTACAAATTA
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Coding sequence (CDS) from alignment at Vu11:33211889..33214180-

>Vigun11g124800.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g124800.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g124800.1; organism=Vigna unguiculata; type=CDS; length=996bp; location=Sequence derived from: Vu11:33211889..33214180- (Vigna unguiculata
ATGCCTGATACTACCTCGCCACCGTCGGAAACAACCCAAAACACTTCAAT
CTTCGCCGCGCTCCACCCTGACATCATCCACGCGCACATCCTCACGCGCC
TCGACGCCGCCACGCTGGCATCTGCTGCATCCGTATCCTCGCTCATGCAC
CGCCTCTGCACACAAGAGGATCTCTGGCGCCAAATCTGCACCGCCACGTG
GCCCTCCTTGCGCGATCCCATCGCCCGCCGCGTCATCTCCACCATTCCCG
GTGGCCACCGCTCCATCTACTCCGACGCCTTCCCATCCCTCCATCACTTC
TCTCTGCATCCCCGCCGCACGCCGCCGCCACCGCCAGAGGAGCTTATCTC
CGCCGTGGACATATATTTCCAGGGAAGGCCCGTGTTCTCGCGCGTGAAAC
GCATCGAAACGCAGAAAGACTGGTTCCTTTCCTCGCCGCTGTGGGTGGAC
GCTCTCGAGCCCAACGAGATGATTCCCACGACGGTGAAGTTTACGAGGAA
GGAAGAGAAGTGGTTGAAGCAGGTGGAGGAGAGTCTGAGCGTGAGCTGGA
TTGTGGTGGATCCAACAGGGAAGCGTGCGACGAACGTTTCGAGCCGGAGG
GCGGTGTTGGCGCGGCGGCACTGGCTGACACGGGAGGTGGAGGTGTTGTA
CGCGGCGGAGATGGTGAGGGAAAGGGTGCAGTGCGTGGTGAAGGTCACGT
GCGGTGGGAAGGTGGGAGGGGAAGTGCACGTGAGGGAGGTGAATCTGGTT
ATGGAGGACACGGAGGGGCGGCAACTGAGTGGGAAGGAGGGTGTGGAGAT
TCTGCAGAGAGGCATGGAGAGTGGAGTGAGGAAGAAAGTGGATGCGGTGA
GGGAGAAGGAGAGGTTTGAGAAGTTCACGTGCTTGATGAAGGAGAGAAGA
GAAAGAAAGTTTAGAAGAGAGAAAGCACGTGATCTTCTTTCAACACTCTT
CGCTTTGCTTCTTTCTCTCTTCTTTTGCTTCCTCCTTGGATTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding