Phvul.002G148100.1

Transcript Overview
NamePhvul.002G148100.1
Unique NamePhvul.002G148100.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:29888604..29897145 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL133Pisum sativum Cameor genome v1aPisum sativum
crpvL023Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL115Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL125Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL363Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL445Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL1172Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0418Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1082Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1366Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
canpvL104Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL112Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL418Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL719Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL110Cicer arietinum
carpvL766Cicer arietinum
ccapvL522Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL589Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Orthologs
Gene/TranscriptAssemblySpecies
Cr_08115.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_18111Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_012712747.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_15980Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_012614Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004490381.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cc_v2.0_13668.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_02742.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va06G036400.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat2g081480.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_027335063.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-TanjilR_28449Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_32500Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_01496Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_11745.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_14985Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G148100Phvul.002G148100_Pv_G19833_v2.1Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G148100.1.v2.1.CDS.12Phvul.002G148100.1.v2.1.CDS.12_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.11Phvul.002G148100.1.v2.1.CDS.11_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.10Phvul.002G148100.1.v2.1.CDS.10_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.9Phvul.002G148100.1.v2.1.CDS.9_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.8Phvul.002G148100.1.v2.1.CDS.8_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.7Phvul.002G148100.1.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.6Phvul.002G148100.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.5Phvul.002G148100.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.4Phvul.002G148100.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.3Phvul.002G148100.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.2Phvul.002G148100.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G148100.1.v2.1.CDS.1Phvul.002G148100.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G148100.1.v2.1.three_prime_UTR.1Phvul.002G148100.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G148100.1.v2.1.five_prime_UTR.1Phvul.002G148100.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G148100.1Phvul.002G148100.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G148100.1_Pv_G19833_v2.1Phvul.002G148100.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP17_ARATH (Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1)

HSP 1 Score: 527.709 bits (1358), Expect = 1.142e-174
Identity = 284/498 (57.03%), Postives = 342/498 (68.67%), Query Frame = 1 
Query: 1033 KVSAIPNLPQNVRSGLKTSMQKVVQQFRSSKDSRSAE-----NEMGFPYELFVELYCYDKMKLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTK-DKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKPLGLVSSNAISSAGKFKRRNLEAIPATSKTRSNSMATSGNSHYLQQKHGKYPNWNDVEDSLSHDFVYPEEWRFQHGVRNTMVDXXXXXXXXXXXXXXXXXXXXIKDSASSADFSDYIFGEVGPNW 2508
            K ++ P + Q   SGLKTS+QKVVQ FR  + S+ ++     +EM F YELFV+LYC D+++L PFGL N GNSCYANAVLQCLA+TRPL SYL +G HSK C+KK WCF CEFE+LI KA+ G SPLSPI ILSK+ KIG HLG G+EEDAHEFLRCAVDTMQSV LKEA  + P AEETTLVG TFGGYL SKIKC+ CL KSER E MMDLTVEIDGDIG+LEEAL QFTA E+LD +N+Y C RCK+Y+KA+KKL +LE PNILT+VLKRFQS NF KL+K + FPE+LD++PYMS       P+YSLYAVVVHLD M+  FSGHYVCY+K + G+WF+ DDS V PV+L  VL E AYMLLYAR SP+P   VS N    +   +RRNL AIP+    + N     G+++ L  +                                  VD SS S     S + + S+ S KDS+   + SDY+FG V P W
Sbjct:  265 KANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPSSSIDEMSFSYELFVKLYC-DRVELQPFGLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHSKTCRKKSWCFVCEFEHLILKARGGESPLSPIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKEAPAAGPFAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEEALAQFTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDISPYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLETVLLEGAYMLLYARDSPRP---VSKNGGRKSK--QRRNLAAIPS---RKGNKKQRDGDNNSLLPR----------------------------------VDWSSGSLSSMFSSSDTTSSCSTKDSSGIENLSDYLFGGVEPVW 719

HSP 2 Score: 81.2629 bits (199), Expect = 2.678e-14
Identity = 44/103 (42.72%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:   49 LAFGFAVIRHVWRNAEAKREDSIMMRLPEDAGXXXXXXXXXXXXXXXXXXXXXXXXXXRWYQCAVCYAPTTMRCARCKAVRYCSGKCQISHWRQGHKDECCPP 357
            +   F +IR  WR+A  +RE+ I  RL   A  E          +       V       Y+CAVC  PTT RC++CK+VRYCS KCQI HWR+GHK+EC  P
Sbjct:    1 MMLVFLLIRRQWRSASVRREEVI--RLIALATEESYLAEEVRPATVDYGGDSVSDV----YRCAVCLYPTTTRCSQCKSVRYCSSKCQILHWRRGHKEECRSP 97
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP16_ARATH (Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1)

HSP 1 Score: 441.425 bits (1134), Expect = 3.168e-138
Identity = 226/404 (55.94%), Postives = 282/404 (69.80%), Query Frame = 1 
Query: 1069 RSGLKTSMQKVVQQFRSSKDSRSAENEMG--------FPYELFVELYCYDKMKLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEAS---VSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKPLGLVSSNAISSAGKFKRRNLEAIPATSKTRSNSMATS 2247
            RSGLK S+ KVV Q+   K    +ENEM         FPYE+F +LY Y K++  P GL N GNSC+AN V QCL +T PLT+Y  Q FHS+ C KK  CFTC FE L+ KAKE  SPLSP G+LS++  IG  LG+G+EEDAHEFLR  VDTMQSVC+K +      S   E+TTL+G TFGGYLRSKIKC++C  KSE  E+MMDLTVEIDGDI TL++AL +FT  EILD +NKY C  CK+YE+A+KKL + E PN+LTI LKRFQ+G F KLNK ++FPE LD+APY+SG  +KS  Y LY V+VHLD+MNAAFSGHYVCY++N Q +W++ DDS V   ++ R+L++ AYML YAR +P P  L       ++ K  R  L      S T S S++TS
Sbjct:  491 RSGLKASVLKVVDQWTRPK----SENEMAGRHGHKGLFPYEVFAKLYTY-KIEFQPCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKLVVKAKEEKSPLSPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIKASEYDMTKSSKLEDTTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPLPKANEKS-TISRSVSTS 887

HSP 2 Score: 84.3445 bits (207), Expect = 3.538e-15
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  229 YQCAVCYAPTTMRCARCKAVRYCSGKCQISHWRQGHKDECCPPTTTMEINDDNIS 393
            + C VCY   T RC+RCKAVRYCSGKCQI HWRQGHKDEC P +   +  D++ S
Sbjct:   72 FHCPVCYCLATTRCSRCKAVRYCSGKCQIIHWRQGHKDECHPASIVYDSEDESDS 126
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP19_ARATH (Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2)

HSP 1 Score: 408.297 bits (1048), Expect = 1.816e-129
Identity = 196/367 (53.41%), Postives = 251/367 (68.39%), Query Frame = 1 
Query: 1069 RSGLKTSMQKVVQQFRSSKDSRSAENEMGFPYELFVELYCYDKMKLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKE---ASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKPLGLVSSNA 2160
            RS  K +   +V Q   SK +    + + FPYE FV  Y +D+  + P GLTNCGNSC+AN VLQCL++TRPL +YL +  H + C++  WCF CEFE  + +A     P SP+ I+S++  IG +LG+GR+EDAHE +R A+D MQSVCL E     V  P A+ETTL+ Y FGG L+S+++C  C   S++YE MMDLTVEI GD  +LEE L QFTA E L  DN Y C RC  Y KA K+L++  APNILTI LKRFQ G F KLNK + FPE  D+ PYMSG  + S +Y LYAV+VHLD++NA+F GHY+CYVK+ +G W+R DDS VE VEL  VLS+RAYMLLY+R  P+P  L S  +
Sbjct:  127 RSASKKTRIALVPQQSQSKATLKPTDVL-FPYESFVRYYNWDRPIMAPCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLDRANYSRFPFSPMNIISRLPNIGGNLGYGRQEDAHELMRFAIDMMQSVCLDEFGGEKVVPPRAQETTLIQYIFGGLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAVSLEECLDQFTAKEWLQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGPYMSGGGEGSDVYKLYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSRVQPRPSNLRSEES 492

HSP 2 Score: 63.929 bits (154), Expect = 5.494e-9
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  232 QCAVCYAPTTMRCARCKAVRYCSGKCQISHWRQGHKDEC--CPPTTTMEINDDNISYRASVSGTESG 426
            +C+VC   TT +C+RCK+VRYCS  CQ S W+ GHK +C     T +  +  D+I + AS+ G  S 
Sbjct:   63 ECSVCGKATTKKCSRCKSVRYCSAACQTSDWKSGHKLKCKGFRSTDSSPVRRDDIDFEASLFGNRSA 129
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP18_ARATH (Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2)

HSP 1 Score: 396.356 bits (1017), Expect = 2.409e-125
Identity = 182/339 (53.69%), Postives = 237/339 (69.91%), Query Frame = 1 
Query: 1114 RSSKDSRSAENEMGFPYELFVELYCYDKMKLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKE---ASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYAR 2121
            R    S     E+ FPYE FVE + +D  +L P GL NCGNSC+AN +LQCL++TRPL +YL +  H + C +  WCF CEF+  +++A +   P SP+ I+S++  IG  LG+GR+EDAHEF+R A+D MQSVCL E     +  P ++ETTL+ Y FGG L+S+++C  C   S++YE MMDL VE+ GD G+LEE L QFTA E L  DN Y C RC  Y KA K+LT+  APNILTI LKR+Q G + KLNK + FPE LD+ PYMS   D S +Y LYAV+VHLD++NA+F GHY+CY+K+  G W+R DDS +E VEL  VLS+RAYMLLY+R
Sbjct:  135 RGQNKSSLKPREVLFPYEEFVEYFNWDNPELAPCGLMNCGNSCFANVILQCLSWTRPLVAYLLEKGHKRECMRNDWCFLCEFQTHVERASQSRFPFSPMNIISRLTNIGGTLGYGRQEDAHEFMRYAIDMMQSVCLDEFGGEKIVPPRSQETTLIQYIFGGLLQSQVQCTVCNHVSDQYENMMDLIVEMHGDAGSLEECLDQFTAEEWLHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGGRYGKLNKRISFPETLDLNPYMSEGGDGSDVYKLYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVELEDVLSQRAYMLLYSR 473
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP15_ARATH (Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP15 PE=1 SV=2)

HSP 1 Score: 389.808 bits (1000), Expect = 1.233e-119
Identity = 183/340 (53.82%), Postives = 236/340 (69.41%), Query Frame = 1 
Query: 1126 DSRSAENEMGFPYELFVELYCYDKMKLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSS---PLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKP 2136
            D R    +M FPYE F++ +  +   L P GL NCGNSCYANAVLQ L  T+PL +YL +  HS+ C  K WC  CE E  +   +E   PLS   ILS +  I   +G G +EDAHEFLR  V +MQS+CL+     +   P  +ETTLV + FGG LRSK+KCLRC  +SERYE +MDLT+EI G + +L++AL QFT PE LD +N Y CSRC  Y +ARK+L++ EAPNILTIVLKRFQ G + K+NK + FPE+LDM P+M+ T D  PLY LYAV+VHLD +NA+FSGHY+ YVK+++G W+R DDS + PV +++V+SE AYML Y R  P+P
Sbjct:  409 DDRYKNLKMLFPYEEFLKFFQCEVFDLSPRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMCELEQHVMMLRESGGPLSASRILSHMRSINCQIGDGSQEDAHEFLRLLVASMQSICLERLGGETKVDPRLQETTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVESLQDALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRYGKINKCISFPEMLDMIPFMTRTGDVPPLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSYPRP 748

HSP 2 Score: 75.0998 bits (183), Expect = 2.353e-12
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  235 CAVCYAPTTMRCARCKAVRYCSGKCQISHWRQGHKDECCP 354
            CA C+ P   RC+RCK+VRYCSGKCQI HWR  HKDEC P
Sbjct:  130 CARCFGPAKTRCSRCKSVRYCSGKCQIIHWRVAHKDECVP 169
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP42_RAT (Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus OX=10116 GN=Usp42 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.091e-69
Identity = 125/303 (41.25%), Postives = 183/303 (60.40%), Query Frame = 1 
Query: 1216 GLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFE-YLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYAR 2121
            GL N GN+C+ANA LQCL YT PL +Y+    HSK C  +G+C  C  + ++ Q        + P+ +++++ +I  H   G +EDAHEFL+  VD MQ  CL  ++      + TTLV   FGGYLRS++KCL C G S+ ++  +D+T+EI     ++ +AL QF  PE LD +N Y CS+CK    A K+ T+  + N+LTI LKRF +    K+ K V++PE LD+ PYMS    +  +Y LYAV+VH        +GHY CY+K   G W++ +DS V   ++  VL+++AY+L Y R
Sbjct:  111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKA-AQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGF--NCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFYIR 410
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP42_MOUSE (Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus OX=10090 GN=Usp42 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.729e-69
Identity = 130/326 (39.88%), Postives = 191/326 (58.59%), Query Frame = 1 
Query: 1216 GLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFE-YLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYARHSPKPLGLVSSNAISSAGKFKRR 2190
            GL N GN+C+ANA LQCL YT PL +Y+    HSK C  +G+C  C  + ++ Q        + P+ +++++ +I  H   G +EDAHEFL+  VD MQ  CL  ++      + TTLV   FGGYLRS++KCL C G S+ ++  +D+T+EI     ++ +AL QF  PE LD +N Y CS+CK    A K+ T+  + N+LTI LKRF +    K+ K V++PE LD+ PYMS    +  +Y LYAV+VH        +GHY CY+K   G W++ +DS V   ++  VL+++AY+L Y R      G  S++   S G+   R
Sbjct:  111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKA-AQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGF--NCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRAVLNQQAYVLFYIRSHDVKNGGESAHPAHSPGQSSPR 433
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP42_BOVIN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus OX=9913 GN=USP42 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.547e-69
Identity = 125/303 (41.25%), Postives = 183/303 (60.40%), Query Frame = 1 
Query: 1216 GLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFE-YLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYAR 2121
            GL N GN+C+ANA LQCL YT PL +Y+    HSK C  +G+C  C  + ++ Q        + P+ +++++ +I  H   G +EDAHEFL+  VD MQ  CL  ++      + TTLV   FGGYLRS++KCL C G S+ ++  +D+T+EI     ++ +AL QF  PE LD +N Y CS+CK    A K+ T+  + N+LT+ LKRF +    K+ K V++PE LD+ PYMS    +  +Y LYAV+VH        +GHY CY+K   G W++ +DS V   ++  VLS++AY+L Y R
Sbjct:  112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKA-AQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLVHTGFN--CHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIR 411
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UBP42_HUMAN (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens OX=9606 GN=USP42 PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 6.851e-69
Identity = 125/303 (41.25%), Postives = 183/303 (60.40%), Query Frame = 1 
Query: 1216 GLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFE-YLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYAR 2121
            GL N GN+C+ANA LQCL YT PL +Y+    HSK C  +G+C  C  + ++ Q        + P+ +++++ +I  H   G +EDAHEFL+  VD MQ  CL  ++      + TTLV   FGGYLRS++KCL C G S+ ++  +D+T+EI     ++ +AL QF  PE LD +N Y CS+CK    A K+ T+  + N+LT+ LKRF +    K+ K V++PE LD+ PYMS    +  +Y LYAV+VH        +GHY CY+K   G W++ +DS V   ++  VLS++AY+L Y R
Sbjct:  112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKA-AQSVNKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFN--CHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIR 411
[Close]
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Match: UL17C_HUMAN (Ubiquitin carboxyl-terminal hydrolase 17-like protein 12 OS=Homo sapiens OX=9606 GN=USP17L12 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.764e-68
Identity = 140/406 (34.48%), Postives = 220/406 (54.19%), Query Frame = 1 
Query: 1216 GLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFTCEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVDTMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERMMDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTVLEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSLYAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERAYMLLYA------RHS--------PKPLGLVSSNAISSAGKFKRRN--LEAIPATSK---TRSNSMATSGNSHYLQQKHGKYPNWN--DVEDSLSHDFVYPEEWRFQHGVRN 2370
            GL N GN+CY NA LQCL YT PL +Y+    HS+ C +   C  C  +  I +A       +P  ++     + +    G++EDAHEFL   VD M+  CL         +++TTL+   FGGY RS+IKCL C G S+ ++  +D+ ++I     ++++AL Q   PE L+ +N Y+C  C     A K LT+L +  +L +VLKRF      K+ K+VQ+PE LDM PYMS       +Y LYAV+VH     +  +GHY  YVK  +G+W++ DD+ V    ++ VLS++AY+L Y       RHS        P+ LG   ++  ++ G+ KR +  L+A P   +    R+   +T  +  +LQ+++   P +N   VE +L  D +   + +++ G++N
Sbjct:   81 GLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALH-----NPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQA-AQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGW--SCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQA-PELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKN 477
The following BLAST results are available for this feature:
BLAST of Phvul.002G148100.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
UBP17_ARATH1.142e-17457.03Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabid... [more]
UBP16_ARATH3.168e-13855.94Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabid... [more]
UBP19_ARATH1.816e-12953.41Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabid... [more]
UBP18_ARATH2.409e-12553.69Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabid... [more]
UBP15_ARATH1.233e-11953.82Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabid... [more]
UBP42_RAT2.091e-6941.25Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus... [more]
UBP42_MOUSE3.729e-6939.88Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus mu... [more]
UBP42_BOVIN4.547e-6941.25Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos ta... [more]
UBP42_HUMAN6.851e-6941.25Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo s... [more]
UL17C_HUMAN7.764e-6834.48Ubiquitin carboxyl-terminal hydrolase 17-like prot... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.60.180coord: 71..119
e-value: 2.4E-10
score: 42.0
NoneNo IPR availableGENE3D3.90.70.10coord: 397..713
e-value: 2.4E-85
score: 288.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..161
NoneNo IPR availableCDDcd02661Peptidase_C19Ecoord: 406..706
e-value: 1.46383E-131
score: 395.491
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 74..118
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 79..116
e-value: 6.4E-9
score: 35.8
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 79..116
score: 11.637
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 405..705
e-value: 3.4E-43
score: 148.0
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00972USP_1coord: 406..421
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 405..708
score: 50.289
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 404..707

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G148100.1_Pv_G19833_v2.1

>Phvul.002G148100.1_Pv_G19833_v2.1 ID=Phvul.002G148100.1_Pv_G19833_v2.1; Name=Phvul.002G148100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=926bp
MLVPGILGFQGLVYVVLAFGFAVIRHVWRNAEAKREDSIMMRLPEDAGVE
EMEVAAAVAPSPVEYSSPVPVNVSRWYQCAVCYAPTTMRCARCKAVRYCS
GKCQISHWRQGHKDECCPPTTTMEINDDNISYRASVSGTESGHHEIKGTH
AGISSSNDSYSSLDPSVGARKSFDDNCYSRFTNPVCNDTTADTNVGFAHN
KDLTVNMKCNASIEVKDSNAIKRTKTNPSNTNDETRLKSKFPKTKSDTSH
DEAANLGSHERRRKVAILEKPVTDTSQCKTIPYLSGSSKYAVIEDVEEES
HLSKFREARRLSSSSRDRLSSTTKGDFLSQSKIVKIDNCHTLHTKVSAIP
NLPQNVRSGLKTSMQKVVQQFRSSKDSRSAENEMGFPYELFVELYCYDKM
KLFPFGLTNCGNSCYANAVLQCLAYTRPLTSYLFQGFHSKRCQKKGWCFT
CEFEYLIQKAKEGISPLSPIGILSKIHKIGSHLGHGREEDAHEFLRCAVD
TMQSVCLKEASVSSPLAEETTLVGYTFGGYLRSKIKCLRCLGKSERYERM
MDLTVEIDGDIGTLEEALGQFTAPEILDKDNKYNCSRCKTYEKARKKLTV
LEAPNILTIVLKRFQSGNFEKLNKSVQFPEVLDMAPYMSGTKDKSPLYSL
YAVVVHLDIMNAAFSGHYVCYVKNIQGEWFRTDDSRVEPVELSRVLSERA
YMLLYARHSPKPLGLVSSNAISSAGKFKRRNLEAIPATSKTRSNSMATSG
NSHYLQQKHGKYPNWNDVEDSLSHDFVYPEEWRFQHGVRNTMVDSSSESS
LFSSSDASSCSTASIKDSASSADFSDYIFGEVGPNWYSHYGLSSNMVASS
SYDNLDTDFFVDSGASRRLRQDTEDKAVLYANKNKNHSGSRGIDLKRYIT
ANHYDKNSGVHVRRTSGDASAQTFY*
back to top

mRNA from alignment at Chr02:29888604..29897145-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G148100.1_Pv_G19833_v2.1 ID=Phvul.002G148100.1_Pv_G19833_v2.1; Name=Phvul.002G148100.1; organism=Phaseolus vulgaris; type=mRNA; length=8542bp; location=Sequence derived from: Chr02:29888604..29897145- (Phaseolus vulgaris
GCATTTATATTTATCATCAACGTAACGTTTGGACATTTAAAAAAAGAGAA
AAAGAAAAATAGTAAAGAGAAGAGAGAGTTGAGACGTTACTGTAGAATGA
TGCAAGGAGAGAAGGATGTGGAAACGGCAAGTCCCGGAGTACATGAGAAA
CGACAAACAGATCCCTGTGTCGCATATTCGCAATTCCACAGTCTGAGCTG
AATCCAAAACCATTTCAGACCCCAAAACTCACCGCCGAATCAACTCTTTT
CATTCCGATGCTCACGCTCATGCTCCTTGCGTTACTCATCCTCTCAGGAT
TTTGATTTTCCTTTTCTGCCCCTGCCGGGAATCTCCTCCTCCCGCCGCCC
ACCGCCCTCGCCCTCCCCCTTCTCGGCGGAGGCTATCTATGTGTAGCAGG
ATTACGACGCTCTGGATCCTGTGTTCGGGGCTGCTCCTGGGTGCGGGATA
AGCAGTGGGAGAGAGCGATGCTGGTACCCGGGATTTTAGGGTTTCAGGGT
TTGGTGTACGTGGTGTTGGCCTTTGGCTTTGCGGTCATTCGGCACGTGTG
GAGGAATGCTGAGGCCAAAAGGGAGGACTCCATCATGATGAGGTTGCCGG
AGGATGCTGGCGTCGAGGAAATGGAGGTTGCTGCGGCGGTCGCGCCGTCT
CCGGTGGAGTACTCTTCGCCGGTTCCGGTGAATGTTTCTCGGTGGTACCA
ATGTGCGGTGTGTTATGCGCCTACCACCATGCGCTGTGCTCGCTGCAAGG
CCGTCAGATATTGGTTCGTTTTTCTTCTTCGTGATTATGTATTGGAACTG
CTATGCTGTGTTGTTACTATTGAGTAGCAAACCCTGATTGAAGAAATGGG
TTGCCATTAATAAGAAATCTCTTCTTCTGTTGCTCTTTGTTTGAAAGGGA
TTATTAGTTTTGGAGGGGGGAGGGGGTTCATGAATTTTGTCATTTTGTGC
TTTGGTTTCAAGGGGCATTGAGATTCTACTTGTGTATTAGTTTGGAAAAA
GCTTTATTGTTGGACGGGGACTTGAGTTCAATGTTATTGGTTACCTTGTA
TGTCGTCTTATGTTTAATTTGGCTTGTTTTCTCAACTCTGTTAAGTAATT
TCATGATTGAATACTCGTTTAGAAGAGAAACCATGCCGATTCTACTGATA
TCATGTTAACCAGCCATAGACATGTATCATCAAGTAGAATACGTTATTGT
GAGCAATTTGACGTGAATTTATTATATAGAACGAGGGTCACCAAATAAGA
TCCAAACATGCACTATAATTATTTGGTTTTCACTTATAATGACAAACCAC
TTCCCCATTGTGAGACCAAATATGCACTAAGGTGTTTGCATTGCCTCTGA
AGTTAGGAGCTATTGTTCTTTCTTTTCCTTTAGCTTGATGACAAAAAAAA
ATGATGAATGTATCGAGGGGGGGTTGCTTTTGTATTTTTGAATTTTTTTC
TCTTTTGTGTTTGAAGTTGAAAAGGCTTGATTTGTCATCTTTGTAATTAG
AAGTTTTACTAATGATTTTGACGTAGCTGGCGTTCCTGAATATATTTCTG
TGACTCTTCTCGGTTCAGTGATATGTCTCTCTAGTCATCATTTCAGCGTC
TTAATATCTTACAATGGTTGTTATTCATTCTCACAAGCGTACTTTCTTGT
AGTTCGGGTAAGTGTCAAATTAGTCACTGGAGGCAAGGCCATAAGGATGA
ATGTTGTCCTCCTACTACTACCATGGAGATCAATGACGACAATATTTCTT
ACAGAGCATCCGTGTCCGGAACCGAGTCTGGTCACCATGGTACTGGTTTT
ATTATTACAAGTATCGTTATATTATTTCATGCACTTACGGTTTATAATTT
GGTTAGATTTTCTGCAGAAATTAAAGGAACACATGCTGGTATCTCATCTT
CCAATGACTCGTATTCCAGTCTTGATCCATCGGTTGGTGCAAGAAAATCA
TTTGATGATAACTGTTACAGCAGATTTACAAACCCTGTCTGCAATGATAC
TACTGCTGATACAAATGTCGGTTTCGCTCATAACAAAGATTTGACAGTTA
ACATGAAATGTAATGCGAGTATTGAAGTTAAGGATTCTAATGCAATTAAA
AGAACCAAGACAAATCCTAGCAACACTAATGATGAGACTCGACTGAAATC
GAAATTTCCCAAAACTAAATCCGATACATCTCATGATGAGGCAGCAAATT
TAGGTAGCCATGAACGCAGAAGAAAAGTTGCGATTCTTGAAAAACCAGTA
ACAGATACCTCTCAATGCAAAACTATTCCTTACTTGAGTGGCTCTAGTAA
ATATGCTGTAATTGAGGATGTAGAAGAAGAATCACATTTGTCCAAATTCA
GAGAAGCGCGAAGATTGTCATCTAGTTCTCGTGATCGGCTATCCTCAACT
ACCAAGGGCGATTTTCTTTCACAGTCCAAGATTGTGAAAATTGACAATTG
TCATACTTTACACACAAAAGTTAGTGCTATTCCAAATCTGCCACAAAATG
TTCGCAGTGGTCTGAAAACATCAATGCAGAAAGTTGTCCAGCAGTTTAGA
AGTTCAAAAGATTCAAGATCTGCTGAAAATGAGGTTGAAATATTTTGACT
CATTTCTTTAGGGATAACTATTATTATTATTATTATTATTATACATAGTA
ACTTTGTCTTTGTTGATTTTGAAATTGTAAAATTTTGGCAGATGGGCTTT
CCTTATGAACTCTTTGTGGAACTTTACTGTTATGACAAGATGAAGCTATT
CCCCTTTGGCCTTACAAACTGTGGGAACAGGTATTGTTGAGTTCTTTTTT
ACTCCTATTGATTGTTATAATATGTTATAGGCCATGTAGCTTCTGGTAGG
GAGAAGGAAGGAAAGAGTTTGGATTAGTTTGATTTGGAGCATTATGTTTC
TTCAATTTTCTTTGAATACACTCATGAGGCACAGTCCTATAATTTTGAGA
ATAGGATGTGGTAATTGAGATGAAAGAAACTTTTGAGAAAACGTCAAGGA
AACATTCTAGTAGCTAATGCTGGCTGGCTACTTTCATACTGATATTCAGT
TCTTGTTTCTCTGCTGTGTTTAATGTAGTTCAAGGGAGGCACAGGCAGTG
CGTGTTTGTGTAGCTTTTCTCTATTCAACATTTATTACCTTGCTAATTGA
AATGCTTCATCTGCAGTTGTTACGCTAATGCTGTTCTCCAGTGCTTGGCA
TATACTCGGCCTTTGACTTCGTATCTTTTTCAAGGCTTCCATTCAAAACG
ATGCAAGTTCCTCTTAATAATATCATCATGCTTCAACTTGTCCAATTATC
AGGACCTTGTAATTAATTAAATATTCATAATGCTTTCACTAGGTCAAAAG
AAGGGATGGTGTTTTACATGTGAGTTTGAATATCTAATTCAGAAGGCAAA
AGAAGGGATTTCTCCACTTTCACCAATTGGGATATTATCTAAGATACACA
AGATTGGAAGCCATCTTGGGCATGGGAGGGAAGAAGATGCGCATGAGTTT
TTAAGGTGAGGCAAATAATTGCTTAAGCTGCGTCGTCATGAATTTATACC
TCAAGTTTTCTACACGATTAATTGCTCAACTGGGCAGGTGTGCAGTTGAT
ACAATGCAATCTGTTTGCCTCAAGGAAGCCAGTGTTTCAAGTCCGTTGGC
AGAAGAAACAACTCTAGTTGGTTACACCTTCGGAGGTTATCTTCGATCTA
AGGTTGTTACTACTAAAAAAGTCTATTTTTTTATTAGGTTGACATGTTTC
AACTTTTACAGAGTTGTAAGAAGATAGTTTTCCTAAAAATTAAAATATAT
TTTATGCAAATTGCAGATAAAGTGCTTACGATGCCTGGGGAAATCTGAGA
GGTATGAGAGAATGATGGATCTTACTGTTGAAATTGATGGTGATATTGGA
ACTTTGGAGGAGGCTCTGGGACAATTTACTGCACCTGAAATCTTGGATAA
AGATAACAAGTATAATTGCAGCAGGTTTGTTAATATTTCCGTTTTCACAT
TTATTCCAATTCCAGTCTATCCTATAATTTTTACCTTATAATGTTCCCGT
GCTTGTTATTCTTTTCTTTCCTTTTTCCTTAGCAAATATAATACATTGTT
TGTATTATGGCTAAGTTTTGTGGCAATTTAATTTTGTTTCTTTTCTCTAA
TGGTAGATCATAGATATTAAATTTGACTACTCTATTAATTAATTTATGTT
TTGAAGTTAAAATTCATGATAAAATCTTCAAGATTCAGATTCTGAGTTTA
TAAATTATAACTAACGAGTTAAATTCCTAAACTGAATGAGCAATTACTGT
AGTTTTACTATGTAATTCATCCATTTGGTGTACAAAGTGATAAACAAAGC
TGTGTGCAGCTTCGAAAGTAATAGAAGGAAAGTTCCTAAACCTGTTGAAA
GGCTAAGTTTGGGATTTTATTGAGAGAACATTAAACTTACTAAAGCTATT
AAAATTTTACCAGAAGCTGTAGAAATGTGCAAGTATTTTTCAGATGTGTG
TGAATACTATATACATTATAGTATAGCTGCCATTCTGAAGTTCTTTTTAT
AGTTTATATCATGAATACTATATACATATAAATTCTCAAAAAATGCTGCA
GAGAATAATAATAATAATGTACAGAGAAAAAAGAGGCAGAGAAACCAGTT
GCCGGTGAAAAGAGAACACTGACAGAAAGTGATAAACCAGTCGCCAGAAA
AGGGAAACTAGTCTCCAAAGTGCTGGGTGGGGATAGATAGTTGTACACGT
AAGTGTTGGTTGAGTTGAGAGATAAAATGAGAAATAACAGCCTTTTGATT
GATTTTCAGGCTTCTATTTCACAAGTGAAAGTTTCTATACTGAACTGTCT
TCTATGGCAGTCCCTGTAGCAGCCAGGGTCCACTCAGCTACATGTCTGTA
GCACACTATTTAAAATCCTGGTTCTACTAGTGGCGTTCTGGGCTTTTGTG
AATCCTGTCAAGTTGATTTAAATGACTCATCTTTAGATGGATTTACAATC
CTCTCTGATGGAATGCCACTCTTGCAAGAAAAATGAGAAGCTTCCACAAC
ATTCTGTGTAGTGTGTGGAAGAAGAATTCTGTGGGACCTTGTGGTTGGGC
TTAACTATGATGTAGTTTGTTTAACGAATTTCTTGCATCAATTTAGGTAC
ATACAGTTTTTGTTCAGCTAATTTTATTTCATTAAACTATATGTCCAATC
ATAGTCATGGTTTAAACTCAAGATTCTAACCAGAATTTGGTAAGGTGAAC
ATTAGTTACTCAATTCATAAGATCCTCCATTCCTACCTAAAATGAAAAAA
AGTATACTTACATATGCATTTGCATAAAAACAGATATAAAGAAAATAACT
GCTAAATGACAGCATTAAATAAACTTAAATTGAAAAATCACAATCATAAC
AAGTCATAAAATCCAAATATAATTTTAGATTAGTCCAAAATTATCAAGAC
AATAAAGAAGGGAGCAGAGACTGAGAGTGAGAGAAGGCACAGTGAATAAT
AGAAGGTAGAGACTAAGCGAGAGAAGAGACTGAGTGCAGAATCAGCTGTT
TGCACTTTGTACAGCCAAAGGGTGGGCAGGGTGGTGGTGGCAGCACGAGA
AAGAAGTTCGAGGGTTGTTGGTTGCAGATGAAATGTAACTCACAAACAGA
GAAAAAGGATATTAGGGATTTTTAGAACTTGGTCAAAGAGATCCAATCCA
GAATCTGGGAATAGAGATCCCATGAGTTCACAATGAAGAATTGTGATTCT
GCTGTGGCCCTGCTTGCTGACAATTCCTGCGAACAATTCACCACACCAGG
GTCCAAGAGAGGAGCGGTTGCTGTTGGCAGCAAGAGAGAGAAGTATGAGG
GTTGTTGGTTGCAGATGATGAAATCAGAATGGGAGAGTCCTAGAGGGGAT
CCCAAATGAAGAGAAAAGGAATTTAGGGACTTTTAGAACTGGGTCAAAGG
GATCTGACCTAGAGTTTGTGTCTTTGTCTTGCTGGGAATTGACAGTCCTG
TAAGTTGACAATGAAGATTGTGGTCCTGCTTGTCTACGATCCCTGTTAAC
AATCCTGCACGCCAGGGTCTAAGAGAGTGGTGGTTGGGATCCAACCCATC
GTCTGGGTATTTTCCTTGCTGAGAATTGACGATCCCACAAGTTCACAATG
AAGATAGTGAATCCACTGGTTCTGCTTGCTGACGATTTCCTTTAACAACT
CAGAATGCCAGGGTTCCCTCTTCTCATAGGATCATACAATCAGAACTTAC
TAGGTTGTCAGAACTTTAGGTACTGAGCACAATGCAAAGTCTGTCATCTG
GATTTTTTTATTCCAGTTTTATGTAGACTAAAGTAGTGCTACAAATGTAT
GCAGTTTAAAGGGGCAAAACTGGTATTTTGAGGATTACTTTTCCTTTTTT
GTGTACGGCGCAAACTCCATATTAAATCACTGAATTTGTTTCTTTCTTCT
TATACAGGTGTAAAACATATGAGAAAGCGCGGAAGAAGTTGACCGTATTG
GAGGCACCAAATATTCTTACCATCGTATTAAAACGATTCCAGGTACATCT
CTCCAGTATTAATTCTGAAGTTTTACTTGTTATCTAGTTACTTTGCTCTA
TAGTGTTACTTTACTTCTATATTTTGTACCTCATGCATATTCTGATGTCT
ACTTTGGCAGTCTGGTAACTTTGAGAAGTTGAACAAGTCGGTTCAGTTCC
CTGAGGTCCTGGATATGGCTCCGTATATGAGTGGAACAAAAGATAAATCT
CCATTATACAGCCTGTATGCAGTGGTTGTCCATTTGGATATTATGAATGC
AGCATTTTCAGGCCATTATGTCTGTTATGTGAAGAACATTCAGGGAGAAT
GGTTCAGGACTGATGACAGCAGGGTGACTTTTTATTCTGATTTACCTTTT
GTGTCTGAAATCTCCTCCACCCCACCTTCCATAAAAAATTAATTATGCAA
TTGATTTTTGGCTTTGATTTTCATACGTGCTTACTTTTTCATATGACAAG
AAAGCTACTCATGTCTCATCTTCAATATATGGAGAATCAATTTAAAAAAA
ACTAAAATTAGGAAGAAATCTCGTTTTGTTTGTGTTTTTTTTTTTCAGAA
GTGGTTTCCAACAGGAGATTAGTCCTAGAGTCTTTATTTGAGAAAAAAAA
TGCTTTGTGAGCAGCAGCTTCCACAGTTCTTCTTGTAAATTATAAGATTA
AGTTTTAAATTTGAAGCATGGCATAGTACAAGGTTATAAGGGTTTTGTCA
ATTGCTAATAAGTTTTTTTATTAAAAGCACTTCTTTAATATTTTTTAAGT
TTCAGAAGCATCATAGAATATTATAAATTCTTATTTGTTATTACTGCCTT
TTGTTTCTGAAATTTTAAATAAATACCTAAACCTTTCTTGAAAAATATCT
GTGATATACAATTTGAATTTTATTTCTTAAACATGTGTTATTAATATTTA
CGATGCTCATTTTGTGAAAGTGATGGCAATATAAATCTGCACAATGTATT
TATTAGGTGAATTTCTGTATGTAAACTGAGGATGCAATCTGTGCTTCTAT
TTAGGTAGAACCTGTCGAATTGTCCAGAGTCTTATCGGAAAGGGCATACA
TGCTTCTTTATGCAAGGTAGTAGGCCTGTGGATGTTGATGTATAATTTCT
TGCTAGATATGTTTATTATTTCTGTAGAATATTTCAGCATTAATAATATC
ATTGTTTTATGCTAATTTTAAAAATCTTCAGGCACTCTCCTAAGCCACTG
GGTTTAGTAAGTAGCAATGCAATATCTTCTGCTGGAAAATTCAAGAGGAG
GAACTTGGAAGCTATTCCTGCTACTTCTAAAACAAGATCAAATTCCATGG
CTACAAGCGGTAATTCTCACTACCTACAGCAGAAGCATGGCAAGTACCCG
AACTGGAATGATGTCGAAGATTCCTTGAGCCATGATTTTGTATATCCAGA
AGAATGGAGATTCCAGCATGGGGTAAGAAATACAATGGTGGATTCTTCTA
GTGAAAGCTCACTTTTCAGCTCTTCAGATGCAAGTTCTTGTAGTACTGCA
AGTATCAAGGACTCAGCCAGTTCCGCTGACTTCTCGGATTACATATTTGG
TGAGGTGGGACCCAATTGGTATAGCCACTATGGGCTTTCATCTAACATGG
TGGCATCTTCCTCATATGATAATTTGGATACAGATTTCTTTGTGGATAGT
GGTGCAAGTAGAAGGCTCCGGCAGGACACAGAAGATAAAGCAGTTTTATA
TGCTAACAAAAACAAAAATCACAGTGGCAGTAGGGGAATTGACCTTAAAA
GATATATCACTGCTAACCATTATGACAAAAATTCTGGTGTACATGTGAGA
AGAACAAGTGGAGATGCATCAGCTCAAACGTTTTATTGAGTTTGAGTTGA
GATTTAAGCAATCATCTTGGATATTTTTGGTGTAGTGAAGAAAATCAGTA
TTTCGCTAATCCAAATAGAATGAGGATTCCTGTTCAATGTTCATTCTGTA
CTCGAATGATTTTATTTATTCATCAGTATATAGAACAACTAT
back to top

Coding sequence (CDS) from alignment at Chr02:29888604..29897145-

>Phvul.002G148100.1_Pv_G19833_v2.1 ID=Phvul.002G148100.1_Pv_G19833_v2.1; Name=Phvul.002G148100.1; organism=Phaseolus vulgaris; type=CDS; length=2778bp; location=Sequence derived from: Chr02:29888604..29897145- (Phaseolus vulgaris
ATGCTGGTACCCGGGATTTTAGGGTTTCAGGGTTTGGTGTACGTGGTGTT
GGCCTTTGGCTTTGCGGTCATTCGGCACGTGTGGAGGAATGCTGAGGCCA
AAAGGGAGGACTCCATCATGATGAGGTTGCCGGAGGATGCTGGCGTCGAG
GAAATGGAGGTTGCTGCGGCGGTCGCGCCGTCTCCGGTGGAGTACTCTTC
GCCGGTTCCGGTGAATGTTTCTCGGTGGTACCAATGTGCGGTGTGTTATG
CGCCTACCACCATGCGCTGTGCTCGCTGCAAGGCCGTCAGATATTGTTCG
GGTAAGTGTCAAATTAGTCACTGGAGGCAAGGCCATAAGGATGAATGTTG
TCCTCCTACTACTACCATGGAGATCAATGACGACAATATTTCTTACAGAG
CATCCGTGTCCGGAACCGAGTCTGGTCACCATGAAATTAAAGGAACACAT
GCTGGTATCTCATCTTCCAATGACTCGTATTCCAGTCTTGATCCATCGGT
TGGTGCAAGAAAATCATTTGATGATAACTGTTACAGCAGATTTACAAACC
CTGTCTGCAATGATACTACTGCTGATACAAATGTCGGTTTCGCTCATAAC
AAAGATTTGACAGTTAACATGAAATGTAATGCGAGTATTGAAGTTAAGGA
TTCTAATGCAATTAAAAGAACCAAGACAAATCCTAGCAACACTAATGATG
AGACTCGACTGAAATCGAAATTTCCCAAAACTAAATCCGATACATCTCAT
GATGAGGCAGCAAATTTAGGTAGCCATGAACGCAGAAGAAAAGTTGCGAT
TCTTGAAAAACCAGTAACAGATACCTCTCAATGCAAAACTATTCCTTACT
TGAGTGGCTCTAGTAAATATGCTGTAATTGAGGATGTAGAAGAAGAATCA
CATTTGTCCAAATTCAGAGAAGCGCGAAGATTGTCATCTAGTTCTCGTGA
TCGGCTATCCTCAACTACCAAGGGCGATTTTCTTTCACAGTCCAAGATTG
TGAAAATTGACAATTGTCATACTTTACACACAAAAGTTAGTGCTATTCCA
AATCTGCCACAAAATGTTCGCAGTGGTCTGAAAACATCAATGCAGAAAGT
TGTCCAGCAGTTTAGAAGTTCAAAAGATTCAAGATCTGCTGAAAATGAGA
TGGGCTTTCCTTATGAACTCTTTGTGGAACTTTACTGTTATGACAAGATG
AAGCTATTCCCCTTTGGCCTTACAAACTGTGGGAACAGTTGTTACGCTAA
TGCTGTTCTCCAGTGCTTGGCATATACTCGGCCTTTGACTTCGTATCTTT
TTCAAGGCTTCCATTCAAAACGATGTCAAAAGAAGGGATGGTGTTTTACA
TGTGAGTTTGAATATCTAATTCAGAAGGCAAAAGAAGGGATTTCTCCACT
TTCACCAATTGGGATATTATCTAAGATACACAAGATTGGAAGCCATCTTG
GGCATGGGAGGGAAGAAGATGCGCATGAGTTTTTAAGGTGTGCAGTTGAT
ACAATGCAATCTGTTTGCCTCAAGGAAGCCAGTGTTTCAAGTCCGTTGGC
AGAAGAAACAACTCTAGTTGGTTACACCTTCGGAGGTTATCTTCGATCTA
AGATAAAGTGCTTACGATGCCTGGGGAAATCTGAGAGGTATGAGAGAATG
ATGGATCTTACTGTTGAAATTGATGGTGATATTGGAACTTTGGAGGAGGC
TCTGGGACAATTTACTGCACCTGAAATCTTGGATAAAGATAACAAGTATA
ATTGCAGCAGGTGTAAAACATATGAGAAAGCGCGGAAGAAGTTGACCGTA
TTGGAGGCACCAAATATTCTTACCATCGTATTAAAACGATTCCAGTCTGG
TAACTTTGAGAAGTTGAACAAGTCGGTTCAGTTCCCTGAGGTCCTGGATA
TGGCTCCGTATATGAGTGGAACAAAAGATAAATCTCCATTATACAGCCTG
TATGCAGTGGTTGTCCATTTGGATATTATGAATGCAGCATTTTCAGGCCA
TTATGTCTGTTATGTGAAGAACATTCAGGGAGAATGGTTCAGGACTGATG
ACAGCAGGGTAGAACCTGTCGAATTGTCCAGAGTCTTATCGGAAAGGGCA
TACATGCTTCTTTATGCAAGGCACTCTCCTAAGCCACTGGGTTTAGTAAG
TAGCAATGCAATATCTTCTGCTGGAAAATTCAAGAGGAGGAACTTGGAAG
CTATTCCTGCTACTTCTAAAACAAGATCAAATTCCATGGCTACAAGCGGT
AATTCTCACTACCTACAGCAGAAGCATGGCAAGTACCCGAACTGGAATGA
TGTCGAAGATTCCTTGAGCCATGATTTTGTATATCCAGAAGAATGGAGAT
TCCAGCATGGGGTAAGAAATACAATGGTGGATTCTTCTAGTGAAAGCTCA
CTTTTCAGCTCTTCAGATGCAAGTTCTTGTAGTACTGCAAGTATCAAGGA
CTCAGCCAGTTCCGCTGACTTCTCGGATTACATATTTGGTGAGGTGGGAC
CCAATTGGTATAGCCACTATGGGCTTTCATCTAACATGGTGGCATCTTCC
TCATATGATAATTTGGATACAGATTTCTTTGTGGATAGTGGTGCAAGTAG
AAGGCTCCGGCAGGACACAGAAGATAAAGCAGTTTTATATGCTAACAAAA
ACAAAAATCACAGTGGCAGTAGGGGAATTGACCTTAAAAGATATATCACT
GCTAACCATTATGACAAAAATTCTGGTGTACATGTGAGAAGAACAAGTGG
AGATGCATCAGCTCAAACGTTTTATTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
IPR001394Peptidase_C19_UCH
IPR018200USP_CS
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf
Vocabulary: Biological Process
TermDefinition
GO:0016579protein deubiquitination
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0036459thiol-dependent ubiquitinyl hydrolase activity