rna-TanjilR_23500

Transcript Overview
Namerna-TanjilR_23500
Unique Namerna-TanjilR_23500_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1017
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:24329689..24330705 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23500gene-TanjilG_23500_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23500rna-TanjilR_23500_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23500_La_Tanjil_v1.0rna-TanjilR_23500_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23500_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24329689..24330705rna-TanjilR_23500_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24329689..24330705Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23500_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24329689..24330705rna-TanjilR_23500_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24329689..24330705Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23500 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 76..277
e-value: 1.0E-14
score: 52.4
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 74..286

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23500_La_Tanjil_v1.0 ID=rna-TanjilR_23500_La_Tanjil_v1.0; Name=rna-TanjilR_23500; organism=Lupinus angustifolius; type=mRNA; length=1017bp
ATGAAGAAACTAGAATATCATATGTTCATAACTATAACAAAGAAAGAAAC
TAGAATATCATATCGTTTCATCGTGTTTTACACTGAAAGAGTGTTTTACA
CTGAAGGAGTGAGTGATGAAGCTAAAATAACAATCCTCTCAACATGTGAT
CTTCCTAAGTATGAGAGTTTAGAATATCCCATTTCACACCCCAATCACCA
TGTGGAATATCATCTTACATCAGGCTACTGCAACGGCATTCACTGTCTAG
ATGCAAGGTTGCTTCGTAACTCCCAAGATTATTCATATTTTGATGAGATT
ATTTTTTGGAACCCAACCACCAGAGAGGTGAAGCTTCTTCCCCCGAATCC
TCGTGCTCCCACTGGCAATGTAATTTGTTTTGGTGGTTTCGGTACATCTG
ATCCTGACACTTTTGATCAATTCAAGTACATCCAAATTTATATGGTCACT
GATGATAATAATATTGCTATTGTTGATGCGGAGCTGTATGATTTGAACTC
TGATTCCTGGTTTGTTATCCATGATATTCATGATTCTTATTTTAATGTCA
ATACTATTCCTGCACTTAACTTTATAGCAGAGGCTTATTGTAACGGGCTC
TATCATTGGTTGTCTGGTGACTTCACATTCATCCTTTGCTTTGACTTTCG
TTGCAACAAATTCCGAACAATCAAAACTCCATCAACTACCAAATTTTGTA
GAATTATTGTGGCTAACGATTGCATTGCATATCTTGCATACGAAAGTCAT
GATTCATCCGGTGATCTGGTTGAAATTTGGAATTTGAAACAAGATGAGAG
TTGGGTTAAACAATGCAAAATTGGTCCAGTTGAAACAGGTATTTATATCC
GTGCTCTTTTGAACGATTACACTGAATTTCTTGCAGAACCAGTATTTGAT
GAAATGCCATTATATAACTCTCGTGGACAACTTCTGCGTAAATTTGATAT
ACCCGCTCAATATTATTATTTCTGCATCTACCATCACGTGGAAACCATAG
CTCCCTTGTCACTCTAG
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protein sequence of rna-TanjilR_23500_La_Tanjil_v1.0

>rna-TanjilR_23500_La_Tanjil_v1.0 ID=rna-TanjilR_23500_La_Tanjil_v1.0; Name=rna-TanjilR_23500_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=338bp
MKKLEYHMFITITKKETRISYRFIVFYTERVFYTEGVSDEAKITILSTCD
LPKYESLEYPISHPNHHVEYHLTSGYCNGIHCLDARLLRNSQDYSYFDEI
IFWNPTTREVKLLPPNPRAPTGNVICFGGFGTSDPDTFDQFKYIQIYMVT
DDNNIAIVDAELYDLNSDSWFVIHDIHDSYFNVNTIPALNFIAEAYCNGL
YHWLSGDFTFILCFDFRCNKFRTIKTPSTTKFCRIIVANDCIAYLAYESH
DSSGDLVEIWNLKQDESWVKQCKIGPVETGIYIRALLNDYTEFLAEPVFD
EMPLYNSRGQLLRKFDIPAQYYYFCIYHHVETIAPLSL
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mRNA from alignment at Chr_LG08-CM007368.1:24329689..24330705-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23500_La_Tanjil_v1.0 ID=rna-TanjilR_23500_La_Tanjil_v1.0; Name=rna-TanjilR_23500; organism=Lupinus angustifolius; type=mRNA; length=1017bp; location=Sequence derived from: Chr_LG08-CM007368.1:24329689..24330705- (Lupinus angustifolius
ATGAAGAAACTAGAATATCATATGTTCATAACTATAACAAAGAAAGAAAC
TAGAATATCATATCGTTTCATCGTGTTTTACACTGAAAGAGTGTTTTACA
CTGAAGGAGTGAGTGATGAAGCTAAAATAACAATCCTCTCAACATGTGAT
CTTCCTAAGTATGAGAGTTTAGAATATCCCATTTCACACCCCAATCACCA
TGTGGAATATCATCTTACATCAGGCTACTGCAACGGCATTCACTGTCTAG
ATGCAAGGTTGCTTCGTAACTCCCAAGATTATTCATATTTTGATGAGATT
ATTTTTTGGAACCCAACCACCAGAGAGGTGAAGCTTCTTCCCCCGAATCC
TCGTGCTCCCACTGGCAATGTAATTTGTTTTGGTGGTTTCGGTACATCTG
ATCCTGACACTTTTGATCAATTCAAGTACATCCAAATTTATATGGTCACT
GATGATAATAATATTGCTATTGTTGATGCGGAGCTGTATGATTTGAACTC
TGATTCCTGGTTTGTTATCCATGATATTCATGATTCTTATTTTAATGTCA
ATACTATTCCTGCACTTAACTTTATAGCAGAGGCTTATTGTAACGGGCTC
TATCATTGGTTGTCTGGTGACTTCACATTCATCCTTTGCTTTGACTTTCG
TTGCAACAAATTCCGAACAATCAAAACTCCATCAACTACCAAATTTTGTA
GAATTATTGTGGCTAACGATTGCATTGCATATCTTGCATACGAAAGTCAT
GATTCATCCGGTGATCTGGTTGAAATTTGGAATTTGAAACAAGATGAGAG
TTGGGTTAAACAATGCAAAATTGGTCCAGTTGAAACAGGTATTTATATCC
GTGCTCTTTTGAACGATTACACTGAATTTCTTGCAGAACCAGTATTTGAT
GAAATGCCATTATATAACTCTCGTGGACAACTTCTGCGTAAATTTGATAT
ACCCGCTCAATATTATTATTTCTGCATCTACCATCACGTGGAAACCATAG
CTCCCTTGTCACTCTAG
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24329689..24330705-

>rna-TanjilR_23500_La_Tanjil_v1.0 ID=rna-TanjilR_23500_La_Tanjil_v1.0; Name=rna-TanjilR_23500; organism=Lupinus angustifolius; type=CDS; length=1017bp; location=Sequence derived from: Chr_LG08-CM007368.1:24329689..24330705- (Lupinus angustifolius
ATGAAGAAACTAGAATATCATATGTTCATAACTATAACAAAGAAAGAAAC
TAGAATATCATATCGTTTCATCGTGTTTTACACTGAAAGAGTGTTTTACA
CTGAAGGAGTGAGTGATGAAGCTAAAATAACAATCCTCTCAACATGTGAT
CTTCCTAAGTATGAGAGTTTAGAATATCCCATTTCACACCCCAATCACCA
TGTGGAATATCATCTTACATCAGGCTACTGCAACGGCATTCACTGTCTAG
ATGCAAGGTTGCTTCGTAACTCCCAAGATTATTCATATTTTGATGAGATT
ATTTTTTGGAACCCAACCACCAGAGAGGTGAAGCTTCTTCCCCCGAATCC
TCGTGCTCCCACTGGCAATGTAATTTGTTTTGGTGGTTTCGGTACATCTG
ATCCTGACACTTTTGATCAATTCAAGTACATCCAAATTTATATGGTCACT
GATGATAATAATATTGCTATTGTTGATGCGGAGCTGTATGATTTGAACTC
TGATTCCTGGTTTGTTATCCATGATATTCATGATTCTTATTTTAATGTCA
ATACTATTCCTGCACTTAACTTTATAGCAGAGGCTTATTGTAACGGGCTC
TATCATTGGTTGTCTGGTGACTTCACATTCATCCTTTGCTTTGACTTTCG
TTGCAACAAATTCCGAACAATCAAAACTCCATCAACTACCAAATTTTGTA
GAATTATTGTGGCTAACGATTGCATTGCATATCTTGCATACGAAAGTCAT
GATTCATCCGGTGATCTGGTTGAAATTTGGAATTTGAAACAAGATGAGAG
TTGGGTTAAACAATGCAAAATTGGTCCAGTTGAAACAGGTATTTATATCC
GTGCTCTTTTGAACGATTACACTGAATTTCTTGCAGAACCAGTATTTGAT
GAAATGCCATTATATAACTCTCGTGGACAACTTCTGCGTAAATTTGATAT
ACCCGCTCAATATTATTATTTCTGCATCTACCATCACGTGGAAACCATAG
CTCCCTTGTCACTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR017451F-box-assoc_interact_dom
IPR011043Gal_Oxase/kelch_b-propeller