rna-TanjilR_10502

Transcript Overview
Namerna-TanjilR_10502
Unique Namerna-TanjilR_10502_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length456
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG19-CM007379.1supercontigChr_LG19-CM007379.1:2756285..2756740 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_10502gene-TanjilG_10502_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10502rna-TanjilR_10502_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_10502_La_Tanjil_v1.0rna-TanjilR_10502_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10502_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:2756285..2756740rna-TanjilR_10502_La_Tanjil_v1.0-exon-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:2756285..2756740Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10502_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:2756285..2756740rna-TanjilR_10502_La_Tanjil_v1.0-CDS-Chr_LG19-CM007379.1_La_Tanjil_v1.0-1579734366:2756285..2756740Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_10502 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_10502_La_Tanjil_v1.0 ID=rna-TanjilR_10502_La_Tanjil_v1.0; Name=rna-TanjilR_10502; organism=Lupinus angustifolius; type=mRNA; length=456bp
ATGGCTATTGTTGATTCTCAAGTTGCTCGTGAAAATATTCCTTCCATGCG
AAGGCAATATTTCTCAAATCATATTAATCCTCAGAGAGAGTTAATTTCAA
ACCCTATAGTTCCAAATTTCAATAGGCCAGTGCTAATGCAAAAACCCAGA
AACTTTACTAATAGTAGGGTTTTCCAAGCACCATTTTCTGAAGTGGCATC
TCGTGGAAGTTCTAGCTCTTTTCTCTTTAACAACCGAGGTAGTACTTCAC
AACTATCTCAGGCACAACGATTTTCATCAGAGGCTATTAGAATCCAACAA
GAAATGAGAATGAAAATGTCTCCAATTGATGGTACTATGCCATTAATAAA
CATGTTGGATAAACCCATCaacaacaatgatttcattATTGGGGATAATA
ACTTGTATCGTGGAAACCCTGATTTGCGAATCTTAGATCTGACGTTAAAG
CTCTAG
back to top

protein sequence of rna-TanjilR_10502_La_Tanjil_v1.0

>rna-TanjilR_10502_La_Tanjil_v1.0 ID=rna-TanjilR_10502_La_Tanjil_v1.0; Name=rna-TanjilR_10502_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=151bp
MAIVDSQVARENIPSMRRQYFSNHINPQRELISNPIVPNFNRPVLMQKPR
NFTNSRVFQAPFSEVASRGSSSSFLFNNRGSTSQLSQAQRFSSEAIRIQQ
EMRMKMSPIDGTMPLINMLDKPINNNDFIIGDNNLYRGNPDLRILDLTLK
L
back to top

mRNA from alignment at Chr_LG19-CM007379.1:2756285..2756740+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_10502_La_Tanjil_v1.0 ID=rna-TanjilR_10502_La_Tanjil_v1.0; Name=rna-TanjilR_10502; organism=Lupinus angustifolius; type=mRNA; length=456bp; location=Sequence derived from: Chr_LG19-CM007379.1:2756285..2756740+ (Lupinus angustifolius
ATGGCTATTGTTGATTCTCAAGTTGCTCGTGAAAATATTCCTTCCATGCG
AAGGCAATATTTCTCAAATCATATTAATCCTCAGAGAGAGTTAATTTCAA
ACCCTATAGTTCCAAATTTCAATAGGCCAGTGCTAATGCAAAAACCCAGA
AACTTTACTAATAGTAGGGTTTTCCAAGCACCATTTTCTGAAGTGGCATC
TCGTGGAAGTTCTAGCTCTTTTCTCTTTAACAACCGAGGTAGTACTTCAC
AACTATCTCAGGCACAACGATTTTCATCAGAGGCTATTAGAATCCAACAA
GAAATGAGAATGAAAATGTCTCCAATTGATGGTACTATGCCATTAATAAA
CATGTTGGATAAACCCATCaacaacaatgatttcattATTGGGGATAATA
ACTTGTATCGTGGAAACCCTGATTTGCGAATCTTAGATCTGACGTTAAAG
CTCTAG
back to top

Coding sequence (CDS) from alignment at Chr_LG19-CM007379.1:2756285..2756740+

>rna-TanjilR_10502_La_Tanjil_v1.0 ID=rna-TanjilR_10502_La_Tanjil_v1.0; Name=rna-TanjilR_10502; organism=Lupinus angustifolius; type=CDS; length=456bp; location=Sequence derived from: Chr_LG19-CM007379.1:2756285..2756740+ (Lupinus angustifolius
ATGGCTATTGTTGATTCTCAAGTTGCTCGTGAAAATATTCCTTCCATGCG
AAGGCAATATTTCTCAAATCATATTAATCCTCAGAGAGAGTTAATTTCAA
ACCCTATAGTTCCAAATTTCAATAGGCCAGTGCTAATGCAAAAACCCAGA
AACTTTACTAATAGTAGGGTTTTCCAAGCACCATTTTCTGAAGTGGCATC
TCGTGGAAGTTCTAGCTCTTTTCTCTTTAACAACCGAGGTAGTACTTCAC
AACTATCTCAGGCACAACGATTTTCATCAGAGGCTATTAGAATCCAACAA
GAAATGAGAATGAAAATGTCTCCAATTGATGGTACTATGCCATTAATAAA
CATGTTGGATAAACCCATCaacaacaatgatttcattATTGGGGATAATA
ACTTGTATCGTGGAAACCCTGATTTGCGAATCTTAGATCTGACGTTAAAG
CTCTAG
back to top