rna-TanjilR_01830

Transcript Overview
Namerna-TanjilR_01830
Unique Namerna-TanjilR_01830_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length426
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG20-CM007380.1supercontigChr_LG20-CM007380.1:1482743..1483168 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01830gene-TanjilG_01830_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01830rna-TanjilR_01830_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01830_La_Tanjil_v1.0rna-TanjilR_01830_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01830_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:1482743..1483168rna-TanjilR_01830_La_Tanjil_v1.0-CDS-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:1482743..1483168Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01830_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:1482743..1483168rna-TanjilR_01830_La_Tanjil_v1.0-exon-Chr_LG20-CM007380.1_La_Tanjil_v1.0-1579734366:1482743..1483168Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01830 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..84

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01830_La_Tanjil_v1.0 ID=rna-TanjilR_01830_La_Tanjil_v1.0; Name=rna-TanjilR_01830; organism=Lupinus angustifolius; type=mRNA; length=426bp
ATGCAAATTACCATTATGCCAAGATGCAAAATTGTATACAGTGGCAGTGA
TGCACCCTTGGAAAATGGAGCTGGAGCAGGAGTAGACACAGATGGTGGAA
AAGCAGATACAGATCCTGGATTACCAAAGACATCAATGTTGGGAGGGCTT
GGGCTTGAAGGAATTGTAGGTAATGAAGACTCTGATGGAGAAAAAACATC
TCCACCTGGTGTAGGAAAAAGAGGCTCAATATCTGGTGAAAGTGTAGGAG
AGGCTAGAGGGGCATTTGATAACACAGTTGGTGCTGCTGAGATGGTTGAA
ACATGCATGTTTTGTATTGAAGCTAAGGCCAATGAACAATTGAATGCAAT
TAAGGCCATGAACATTGATGAGAGTAGTAAACAAAAGGAAGCCATAAAGA
ATGGTGAAAATCAATATGAAGTCTAA
back to top

protein sequence of rna-TanjilR_01830_La_Tanjil_v1.0

>rna-TanjilR_01830_La_Tanjil_v1.0 ID=rna-TanjilR_01830_La_Tanjil_v1.0; Name=rna-TanjilR_01830_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=141bp
MQITIMPRCKIVYSGSDAPLENGAGAGVDTDGGKADTDPGLPKTSMLGGL
GLEGIVGNEDSDGEKTSPPGVGKRGSISGESVGEARGAFDNTVGAAEMVE
TCMFCIEAKANEQLNAIKAMNIDESSKQKEAIKNGENQYEV
back to top

mRNA from alignment at Chr_LG20-CM007380.1:1482743..1483168-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01830_La_Tanjil_v1.0 ID=rna-TanjilR_01830_La_Tanjil_v1.0; Name=rna-TanjilR_01830; organism=Lupinus angustifolius; type=mRNA; length=426bp; location=Sequence derived from: Chr_LG20-CM007380.1:1482743..1483168- (Lupinus angustifolius
ATGCAAATTACCATTATGCCAAGATGCAAAATTGTATACAGTGGCAGTGA
TGCACCCTTGGAAAATGGAGCTGGAGCAGGAGTAGACACAGATGGTGGAA
AAGCAGATACAGATCCTGGATTACCAAAGACATCAATGTTGGGAGGGCTT
GGGCTTGAAGGAATTGTAGGTAATGAAGACTCTGATGGAGAAAAAACATC
TCCACCTGGTGTAGGAAAAAGAGGCTCAATATCTGGTGAAAGTGTAGGAG
AGGCTAGAGGGGCATTTGATAACACAGTTGGTGCTGCTGAGATGGTTGAA
ACATGCATGTTTTGTATTGAAGCTAAGGCCAATGAACAATTGAATGCAAT
TAAGGCCATGAACATTGATGAGAGTAGTAAACAAAAGGAAGCCATAAAGA
ATGGTGAAAATCAATATGAAGTCTAA
back to top

Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:1482743..1483168-

>rna-TanjilR_01830_La_Tanjil_v1.0 ID=rna-TanjilR_01830_La_Tanjil_v1.0; Name=rna-TanjilR_01830; organism=Lupinus angustifolius; type=CDS; length=426bp; location=Sequence derived from: Chr_LG20-CM007380.1:1482743..1483168- (Lupinus angustifolius
ATGCAAATTACCATTATGCCAAGATGCAAAATTGTATACAGTGGCAGTGA
TGCACCCTTGGAAAATGGAGCTGGAGCAGGAGTAGACACAGATGGTGGAA
AAGCAGATACAGATCCTGGATTACCAAAGACATCAATGTTGGGAGGGCTT
GGGCTTGAAGGAATTGTAGGTAATGAAGACTCTGATGGAGAAAAAACATC
TCCACCTGGTGTAGGAAAAAGAGGCTCAATATCTGGTGAAAGTGTAGGAG
AGGCTAGAGGGGCATTTGATAACACAGTTGGTGCTGCTGAGATGGTTGAA
ACATGCATGTTTTGTATTGAAGCTAAGGCCAATGAACAATTGAATGCAAT
TAAGGCCATGAACATTGATGAGAGTAGTAAACAAAAGGAAGCCATAAAGA
ATGGTGAAAATCAATATGAAGTCTAA
back to top