evm.Ca_v2.0_23906
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.Ca_v2.0_23906 vs. Araport11
Match: | (Symbols: EID1 | EMPFINDLICHER IM DUNKELROTEN LICHT 1 | chr4:1072555-1073565 FORWARD LENGTH=336) HSP 1 Score: 58.9214 bits (141), Expect = 6.527e-11 Identity = 31/105 (29.52%), Postives = 50/105 (47.62%), Query Frame = 0 Query: 5 LTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELR-----------------------SSSSSYFSLHKLPFCCPGPIHAGILFDTYD 86 + +D++ +I +K+++DPR ARL+CV K ++R+ C + S IP + + + SL+KL CCPG HAGIL + D Sbjct: 9 IPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSD 113
BLAST of evm.Ca_v2.0_23906 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8LEA8|EID1_ARATH (Phytochrome A-associated F-box protein OS=Arabidopsis thaliana OX=3702 GN=EID1 PE=1 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 6.443e-10 Identity = 31/105 (29.52%), Postives = 50/105 (47.62%), Query Frame = 0 Query: 5 LTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELR-----------------------SSSSSYFSLHKLPFCCPGPIHAGILFDTYD 86 + +D++ +I +K+++DPR ARL+CV K ++R+ C + S IP + + + SL+KL CCPG HAGIL + D Sbjct: 9 IPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSD 113
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2XTM9|A0A1S2XTM9_CICAR (Phytochrome A-associated F-box protein OS=Cicer arietinum OX=3827 GN=LOC101513141 PE=4 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.604e-39 Identity = 83/112 (74.11%), Postives = 86/112 (76.79%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYDGFSDKQHR--------HLLFMFNHNP 104 ML ELTDDIIL+ILWKVEEDPR ARLSCVS KL LIRDFCWNKKSSSTIP EL SSSSS SLHKLPFCCPGPIHAGILFDTYD FSD+Q H+ N NP Sbjct: 1 MLIELTDDIILNILWKVEEDPRDWARLSCVSTKLFSLIRDFCWNKKSSSTIPSELLSSSSSDLSLHKLPFCCPGPIHAGILFDTYDDFSDQQQPTTTTSSSLHVQPQTNENP 112
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3PLG7|A0A2K3PLG7_TRIPR (Phytochrome A-associated F-box protein OS=Trifolium pratense OX=57577 GN=L195_g012848 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 4.140e-33 Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYDGFSDKQHRH 95 ML+ELTDDIIL+ILWK+E+DPR ARLSCVS KL LI DFCW K+S IP +L SSS SLHKLPFCCPG +HAGILF+T D + QH+ Sbjct: 1 MLSELTDDIILNILWKIEDDPRDWARLSCVSTKLNSLIHDFCWKNKTSLIIPSQLLVSSSQDHSLHKLPFCCPGLVHAGILFNTADSPEENQHQQ 95
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|I3SYE7|I3SYE7_MEDTR (Phytochrome A-associated F-box protein OS=Medicago truncatula OX=3880 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.239e-31 Identity = 69/93 (74.19%), Postives = 73/93 (78.49%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYDGFSDKQH 93 ML+ELTDDIIL ILWKVEEDPR ARLSCVS KL LI DFCW KSS IP EL SSS SLHKLPFCCPGP+HAGILF+T D F D+QH Sbjct: 1 MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSSQDLSLHKLPFCCPGPLHAGILFNTAD-FPDEQH 92
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|G7KRX0|G7KRX0_MEDTR (Phytochrome A-associated F-box protein, putative OS=Medicago truncatula OX=3880 GN=11435282 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.293e-31 Identity = 69/93 (74.19%), Postives = 73/93 (78.49%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYDGFSDKQH 93 ML+ELTDDIIL ILWKVEEDPR ARLSCVS KL LI DFCW KSS IP EL SSS SLHKLPFCCPGP+HAGILF+T D F D+QH Sbjct: 1 MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSSQDLSLHKLPFCCPGPLHAGILFNTAD-FPDEQH 92
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A396H6S5|A0A396H6S5_MEDTR (Putative F-box domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0269311 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.154e-31 Identity = 69/93 (74.19%), Postives = 73/93 (78.49%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYDGFSDKQH 93 ML+ELTDDIIL ILWKVEEDPR ARLSCVS KL LI DFCW KSS IP EL SSS SLHKLPFCCPGP+HAGILF+T D F D+QH Sbjct: 1 MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSSQDLSLHKLPFCCPGPLHAGILFNTAD-FPDEQH 92
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4XQ04|A0A9D4XQ04_PEA (F-box domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_030983 PE=4 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.138e-26 Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIP-YELRSSSSSYFSLHKLPFCCPGPIHAGILF-DTYDGFSDKQH 93 ML+ELTDDI+L+ILWKVEEDPR ARLSCVS KL LI FCW KSS TIP L SSSS SLHKL FCCPGP+HAGILF +T F D+ H Sbjct: 1 MLSELTDDIVLNILWKVEEDPRDWARLSCVSSKLNSLIHAFCWKNKSSLTIPSELLSSSSSQDHSLHKLSFCCPGPLHAGILFNNTTADFPDEHH 95
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445LF62|A0A445LF62_GLYSO (Phytochrome A-associated F-box protein OS=Glycine soja OX=3848 GN=D0Y65_007828 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.953e-24 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSY--FSLHKLPFCCPGPIHAGILFDTYD 86 + +ELTDDI+L+I +K+E+DPR ARL+CV K L+RDFCW K S TIP +L S+++S SLHKL FCCPG HAG+LFDT D Sbjct: 11 LFSELTDDIVLNIFYKLEDDPRHWARLACVCTKFSSLVRDFCWKTKCSLTIPQDLLSAAASDPPLSLHKLSFCCPGLRHAGLLFDTSD 98
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|I1JQL8|I1JQL8_SOYBN (F-box domain-containing protein OS=Glycine max OX=3847 GN=100789324 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.953e-24 Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSY--FSLHKLPFCCPGPIHAGILFDTYD 86 + +ELTDDI+L+I +K+E+DPR ARL+CV K L+RDFCW K S TIP +L S+++S SLHKL FCCPG HAG+LFDT D Sbjct: 11 LFSELTDDIVLNIFYKLEDDPRHWARLACVCTKFSSLVRDFCWKTKCSLTIPQDLLSAAASDPPLSLHKLSFCCPGLRHAGLLFDTSD 98
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TNA3|A0A1S3TNA3_VIGRR (Phytochrome A-associated F-box protein OS=Vigna radiata var. radiata OX=3916 GN=LOC106757155 PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.140e-22 Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSS-SYFSLHKLPFCCPGPIHAGILFDTYD 86 + +ELTDDI+L+I + +EEDPR ARL+CV K LI DFCW K S TIP +L S+S SLHKL FCCPG HAG+LFDT D Sbjct: 9 VFSELTDDIVLNIFYNLEEDPRHWARLACVCTKFSSLITDFCWKSKCSRTIPSDLLSASDHPPLSLHKLAFCCPGLRHAGLLFDTSD 95
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8L5E7|A0A8B8L5E7_ABRPR (Phytochrome A-associated F-box protein-like OS=Abrus precatorius OX=3816 GN=LOC113861346 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.513e-22 Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 0 Query: 1 MLTELTDDIILSILWKVEEDPRGLARLSCVSIKLCYLIRDFCWNKKSSSTIPYELRSSSSSYFSLHKLPFCCPGPIHAGILFDTYD 86 TELTDDIIL+I + +E+DPR RL+CV K LIRDFCW ++SS TIP +L S+ S+HKL FCCPG +HAG+L DT D Sbjct: 13 AFTELTDDIILNIFFNLEDDPRHWGRLACVCTKFSSLIRDFCWKRRSSRTIPSDLLSTDDP--SIHKLSFCCPGLLHAGLLLDTSD 96 The following BLAST results are available for this feature:
BLAST of evm.Ca_v2.0_23906 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11) Total hits: 1
BLAST of evm.Ca_v2.0_23906 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot ) Total hits: 1
BLAST of evm.Ca_v2.0_23906 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCicArie.Frontier.2.0.Ca_v2.0_23906.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23906.1; Name=evm.Ca_v2.0_23906; organism=Cicer arietinum; type=mRNA; length=414bpback to top protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_23906.1 >drCicArie.Frontier.2.0.Ca_v2.0_23906.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23906.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_23906.1; organism=Cicer arietinum; type=polypeptide; length=137bpback to top mRNA from alignment at Ca8_v2.0:10392424..10392837+ Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>drCicArie.Frontier.2.0.Ca_v2.0_23906.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23906.1; Name=evm.Ca_v2.0_23906; organism=Cicer arietinum; type=mRNA; length=414bp; location=Sequence derived from: Ca8_v2.0:10392424..10392837+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca8_v2.0:10392424..10392837+ >drCicArie.Frontier.2.0.Ca_v2.0_23906.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23906.1; Name=evm.Ca_v2.0_23906; organism=Cicer arietinum; type=CDS; length=414bp; location=Sequence derived from: Ca8_v2.0:10392424..10392837+ (Cicer arietinumback to top |