evm.Ca_v2.0_23543

Transcript Overview


Name	evm.Ca_v2.0_23543
Unique Name	drCicArie.Frontier.2.0.Ca_v2.0_23543.1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	1065

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca8_v2.0	chromosome	Ca8_v2.0:6099414..6105602 -	Cicer arietinum cv. CDC Frontier genome v2.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum cv. CDC Frontier genome v2.0	2024-06-26
InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL	2024-07-26

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.Ca_v2.0_23543	drCicArie.Frontier.2.0.Ca_v2.0_23543	Cicer arietinum	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon5	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon5	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon4	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon4	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon3	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon3	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon2	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon2	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon1	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.exon1	Cicer arietinum	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.utr3p1	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.utr3p1	Cicer arietinum	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1_2	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1_3	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1_4	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_23543.1_5	Cicer arietinum	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23543.1.utr5p1	drCicArie.Frontier.2.0.Ca_v2.0_23543.1.utr5p1	Cicer arietinum	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.Ca_v2.0_23543.1	Cicer arietinum	polypeptide
drCicArie.Frontier.2.0.Ca_v2.0_23543.1	drCicArie.Frontier.2.0.Ca_v2.0_23543.1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1b, AtLARP1b | La related protein 1b | chr5:26427639-26429772 FORWARD LENGTH=453)

HSP 1 Score: 171.4 bits (433), Expect = 5.532e-49
Identity = 97/251 (38.65%), Postives = 149/251 (59.36%), Query Frame = 0

Query:   81 RNSFRNRNGGPNQRGDGAHHHNYGNRRD-----QDWNSRRNFNGRDMHVPPRNVPRILRP-------SLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPV--VLNQDVLAEQVHNIALEKTINDG 317
            RNS RNRN     RG+G HH   GNRR+     Q   S RN++GRDMH+ P+    ++RP       S P +SAQ++  P +  +G  + + + A  V     P PSPD +  V   P  P+YF   D  L++KI+ Q++YYFS +NL +D  LR  M+D+GWVP+++IA F+++  LT+NIQ IL+A+R+S  VE+QG+ +RRR DW ++++P   + P+ + P     N   L  Q+ ++ L +   +G
Sbjct:  211 RNSQRNRNSSSYPRGEGLHH---GNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFM---PHPSPDPMGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLP---REPSRSGPAAGASNNASLVSQIESMTLSERSREG 452

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1c, AtLARP1c | La related protein 1c | chr4:16997433-17000410 FORWARD LENGTH=523)

HSP 1 Score: 169.474 bits (428), Expect = 8.297e-48
Identity = 116/316 (36.71%), Postives = 184/316 (58.23%), Query Frame = 0

Query:   26 RQKPIKH-NSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDH-----PQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQD-----WNSRRNFNGRDMHVPP-RNVPRILR---PSLPPNSAQFIPPPPMRPFGSHMGF-HELAPPVVFVAAPPPSPDSLRGVPFVPPMP----LYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQ-DVLAEQVHNIALEKTINDGAGG 320
            RQ+  K  N ++ S+NG  SQ SA Q S     SHN S +   Q++GF S +H     P QR+S+RN+NG         HH ++G RR+Q+     W  +R+FNGR+ +    R  P  +R   P++ P   QF+     +PF SH+ F  ELA    +             +P++ P+P     ++   DP LH K+  QI YYFS+ENLI D +LR  M+++G+VP++++AGFKKV  LTDNIQ I++A++ S  VEVQGD IR+R++W+ W++    + P  + P  +++ D +A+++ N++++++  D  GG
Sbjct:  200 RQRSFKQRNGASGSANGTVSQPSA-QGSFTELPSHNPSPRGQNQKNGFASQNHGGTENPSQRDSYRNQNGN--------HHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQP-IPQFMA---AQPFPSHIPFPTELAQSSYYPR-----------MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVL---RRNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGG 488

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1c, AtLARP1c | La related protein 1c | chr4:16997433-16999329 FORWARD LENGTH=414)

HSP 1 Score: 117.087 bits (292), Expect = 3.667e-29
Identity = 88/238 (36.97%), Postives = 131/238 (55.04%), Query Frame = 0

Query:   26 RQKPIKH-NSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDH-----PQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQD-----WNSRRNFNGRDMHVPP-RNVPRILR---PSLPPNSAQFIPPPPMRPFGSHMGF-HELAPPVVFVAAPPPSPDSLRGVPFVPPMP----LYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKV 243
            RQ+  K  N ++ S+NG  SQ SA Q S     SHN S +   Q++GF S +H     P QR+S+RN+NG         HH ++G RR+Q+     W  +R+FNGR+ +    R  P  +R   P++ P   QF+     +PF SH+ F  ELA    +             +P++ P+P     ++   DP LH K+  QI YYFS+ENLI D +LR  M+++G+VP++++AGFKKV
Sbjct:  200 RQRSFKQRNGASGSANGTVSQPSA-QGSFTELPSHNPSPRGQNQKNGFASQNHGGTENPSQRDSYRNQNGN--------HHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQP-IPQFMA---AQPFPSHIPFPTELAQSSYYPR-----------MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKV 413

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1a, AtLARP1a | La related protein 1a | chr5:7199191-7203879 REVERSE LENGTH=826)

HSP 1 Score: 100.908 bits (250), Expect = 6.252e-23
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 0

Query:  111 WNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDP--------QLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWI 280
            W  +R F+       PRN+P+   P        F  PP M P    +       P      P P P ++RG P+ P    Y     P         L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+  S++VEVQGD+IR+R+ W  WI
Sbjct:  196 WPHQRGFD-------PRNMPQGAGPR------NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRG-PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWI 359

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1a, AtLARP1a | La related protein 1a | chr5:7198817-7203879 REVERSE LENGTH=832)

HSP 1 Score: 100.523 bits (249), Expect = 6.757e-23
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 0

Query:  111 WNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDP--------QLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWI 280
            W  +R F+       PRN+P+   P        F  PP M P    +       P      P P P ++RG P+ P    Y     P         L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+  S++VEVQGD+IR+R+ W  WI
Sbjct:  196 WPHQRGFD-------PRNMPQGAGPR------NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRG-PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWI 359

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1a, AtLARP1a | La related protein 1a | chr5:7198817-7203879 REVERSE LENGTH=833)

HSP 1 Score: 100.523 bits (249), Expect = 6.760e-23
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 0

Query:  111 WNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDP--------QLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWI 280
            W  +R F+       PRN+P+   P        F  PP M P    +       P      P P P ++RG P+ P    Y     P         L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+  S++VEVQGD+IR+R+ W  WI
Sbjct:  196 WPHQRGFD-------PRNMPQGAGPR------NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRG-PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWI 359

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP1b, AtLARP1b | La related protein 1b | chr5:26427639-26428988 FORWARD LENGTH=348)

HSP 1 Score: 77.411 bits (189), Expect = 1.181e-15
Identity = 55/143 (38.46%), Postives = 78/143 (54.55%), Query Frame = 0

Query:   81 RNSFRNRNGGPNQRGDGAHHHNYGNRRD-----QDWNSRRNFNGRDMHVPPRNVPRILRP-------SLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYF 211
            RNS RNRN     RG+G HH   GNRR+     Q   S RN++GRDMH+ P+    ++RP       S P +SAQ++  P +  +G  + + + A     V  P PSPD +  V   P  P+YF   D  L++KI+ Q++YYF
Sbjct:  211 RNSQRNRNSSSYPRGEGLHH---GNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYA---QHVFMPHPSPDPMGLVGPFPLQPMYFRNFDAILYNKILTQVEYYF 347

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP6a, AtLARP6a | La related protein 6a | chr5:18755388-18758056 FORWARD LENGTH=422)

HSP 1 Score: 63.929 bits (154), Expect = 5.914e-11
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 0

Query:  195 PDPQLHSKIVIQIDYYFSNENLIKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGD--KIRRRNDWKRWIMPTP-VQFPNVNTPVVLN 297
            P  +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ A++ SS + V  D  K++R       + P P ++ P + T +V N
Sbjct:   99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKR-------LSPLPEIRDPKIFTVLVEN 199

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP6a, AtLARP6a | La related protein 6a | chr5:18755388-18757723 FORWARD LENGTH=340)

HSP 1 Score: 62.7734 bits (151), Expect = 9.372e-11
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 0

Query:  195 PDPQLHSKIVIQIDYYFSNENLIKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGD--KIRRRNDWKRWIMPTP-VQFPNVNTPVVLN 297
            P  +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ A++ SS + V  D  K++R       + P P ++ P + T +V N
Sbjct:   99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKR-------LSPLPEIRDPKIFTVLVEN 199

[Close]

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Match: | (Symbols: LARP6a, AtLARP6a | La related protein 6a | chr5:18755388-18757723 FORWARD LENGTH=340)

HSP 1 Score: 62.7734 bits (151), Expect = 1.085e-10
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 0

Query:  195 PDPQLHSKIVIQIDYYFSNENLIKDTFLRQNM--DDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGD--KIRRRNDWKRWIMPTP-VQFPNVNTPVVLN 297
            P  +L+ KI+ Q++YYFS+ENL  D FL   M  + +G+VPI  IA F K+  LT +  LI+ A++ SS + V  D  K++R       + P P ++ P + T +V N
Sbjct:   99 PIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKR-------LSPLPEIRDPKIFTVLVEN 199

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8RWR2|LRP1B_ARATH (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.371e-48
Identity = 97/251 (38.65%), Postives = 149/251 (59.36%), Query Frame = 0

Query:   81 RNSFRNRNGGPNQRGDGAHHHNYGNRRD-----QDWNSRRNFNGRDMHVPPRNVPRILRP-------SLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPV--VLNQDVLAEQVHNIALEKTINDG 317
            RNS RNRN     RG+G HH   GNRR+     Q   S RN++GRDMH+ P+    ++RP       S P +SAQ++  P +  +G  + + + A  V     P PSPD +  V   P  P+YF   D  L++KI+ Q++YYFS +NL +D  LR  M+D+GWVP+++IA F+++  LT+NIQ IL+A+R+S  VE+QG+ +RRR DW ++++P   + P+ + P     N   L  Q+ ++ L +   +G
Sbjct:  210 RNSQRNRNSSSYPRGEGLHH---GNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPSFPASSAQYMAAPQLGSYGGPIIYPDYAQHVFM---PHPSPDPMGLVGPFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLP---REPSRSGPAAGASNNASLVSQIESMTLSERSREG 451

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q94K80|LRP1C_ARATH (La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.076e-47
Identity = 116/316 (36.71%), Postives = 184/316 (58.23%), Query Frame = 0

Query:   26 RQKPIKH-NSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDH-----PQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQD-----WNSRRNFNGRDMHVPP-RNVPRILR---PSLPPNSAQFIPPPPMRPFGSHMGF-HELAPPVVFVAAPPPSPDSLRGVPFVPPMP----LYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQ-DVLAEQVHNIALEKTINDGAGG 320
            RQ+  K  N ++ S+NG  SQ SA Q S     SHN S +   Q++GF S +H     P QR+S+RN+NG         HH ++G RR+Q+     W  +R+FNGR+ +    R  P  +R   P++ P   QF+     +PF SH+ F  ELA    +             +P++ P+P     ++   DP LH K+  QI YYFS+ENLI D +LR  M+++G+VP++++AGFKKV  LTDNIQ I++A++ S  VEVQGD IR+R++W+ W++    + P  + P  +++ D +A+++ N++++++  D  GG
Sbjct:  200 RQRSFKQRNGASGSANGTVSQPSA-QGSFTELPSHNPSPRGQNQKNGFASQNHGGTENPSQRDSYRNQNGN--------HHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQP-IPQFMA---AQPFPSHIPFPTELAQSSYYPR-----------MPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVL---RRNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGG 488

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q940X9|LRP1A_ARATH (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.183e-22
Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 0

Query:  111 WNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDP--------QLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWI 280
            W  +R F+       PRN+P+   P        F  PP M P    +       P      P P P ++RG P+ P    Y     P         L  +++ Q++YYFS+ENL  D +L   MD++GWVP K+IAGFK+V  +T ++  I+ A+  S++VEVQGD+IR+R+ W  WI
Sbjct:  196 WPHQRGFD-------PRNMPQGAGPR------NFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRG-PYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWI 359

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q659C4|LAR1B_HUMAN (La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.787e-18
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 0

Query:  199 LHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRW 279
            L   I  QI+YYFS ENL +D FLR  MD+QG++PI LIAGF++V  LT N+ LIL+A++ S+ VE+  +K+R++ + ++W
Sbjct:  215 LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKW 295

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6PKG0|LARP1_HUMAN (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 5.851e-18
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 0

Query:  199 LHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLN 297
            L   I  QI+YYFS +NL +D FLR+ MD  G++PI LIA F +V  LT +I LI  A++ S  VE+  +K+RRR + ++W +P  V +   +   +LN
Sbjct:  403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQLLN 501

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6ZQ58|LARP1_MOUSE (La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.901e-17
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 0

Query:  199 LHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTP--VQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVL 324
            L   I  QI+YYFS +NL +D FLR+ MD  G++PI LIA F +V  LT +I LI  A++ S  VE+  +K+RRR + ++W +P P  V +   +   +LN      + H    +K      G P  +
Sbjct:  378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQH---YQKETESAPGSPRAV 502

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9P6K0|YLA3_SCHPO (Uncharacterized HTH La-type RNA-binding protein C1527.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1527.03 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.781e-16
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 0

Query:  203 IVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGD-------KIRRRNDWKRWIMPTP-------VQFPNVN 291
            +  Q++YYFS ENL KD FLR++MDD+G+VP+  +A F ++   + ++ L+  A + S  ++V  D       K+RR+  W  WI+P+         ++P +N
Sbjct:  329 LTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACKASDIIDVAIDLQSPMSIKVRRKETWSPWILPSESRLKFEMAKYPQIN 431

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|J9VT60|LARP1_CRYNH (La RNA-binding domain-containing protein LHP1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=LHP1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.377e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 0

Query:  182 VPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRN-DWKRWIMP--TPVQF 287
            VP + P+  Y  G           Q++YYFS +NL  D FLRQ MD +GW+ I +IA F ++  LT    ++ + +  S+ +EV+ DK+R    +  RW++P   P +F
Sbjct:  706 VPNLDPLRFYVLG-----------QVEYYFSMQNLAMDFFLRQQMDSEGWIDIAMIASFNRIKSLTPETSIVRECMILSNYLEVREDKVRLSGAESHRWVLPDAAPSKF 803

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|D5MCN2|LARP1_CAEEL (La-related protein 1 OS=Caenorhabditis elegans OX=6239 GN=larp-1 PE=4 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.698e-14
Identity = 50/143 (34.97%), Postives = 78/143 (54.55%), Query Frame = 0

Query:  142 AQFIPPPPMRPFGSHMGFHELAPPVVF---VAAPPPSPDSL-RGVPFVP-------PMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRR 273
            A F PP PM      +  H ++PP+     V +P  + + +   +PF P       P P+     D  L   +  QI+YYFS ENL KD FLR+ M  +G++P+ LIA F +V  LT++  LIL+A++ S+ V++  D ++ R
Sbjct:  521 APFRPPMPM------LSPHLMSPPLDRDGGVTSPVSNGEPINTAIPFAPIYNPPTAPRPVT----DDTLKEYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYSLILEALKDSTKVDMSPDGLQIR 653

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9VAW5|LARP_DROME (La-related protein 1 OS=Drosophila melanogaster OX=7227 GN=larp PE=1 SV=5)

HSP 1 Score: 75.8702 bits (185), Expect = 1.273e-13
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 0

Query:  179 LRGVPFVPPMPLYFAGPDP-QLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEV-QGDKIRRRNDWKRWIMPTPVQFPNVN 291
            L G  +   +P  +   D   +   I  Q++YYFS +NL  D FLR+ MD +G++P+ LIA F +V+ LT ++ +I++A++ S  +E+ +G K+R +     W +    + P VN
Sbjct:  708 LMGTHYFGNVPAAYIELDANSIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAIKESDKLELFEGYKVRTKTTPTTWPI---TEVPEVN 819

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2YZ22|A0A1S2YZ22_CICAR (La-related protein 1B-like OS=Cicer arietinum OX=3827 GN=LOC101513991 PE=4 SV=1)

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSISARN 354
            MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSISARN
Sbjct:  133 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSISARN 486

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BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A396HM34|A0A396HM34_MEDTR (Putative winged helix-turn-helix DNA-binding domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr5g0405961 PE=4 SV=1)

HSP 1 Score: 571.622 bits (1472), Expect = 0.000e+0
Identity = 288/387 (74.42%), Postives = 315/387 (81.40%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQ---------------------RSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHH-NYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFG-----------ESTGQLGLHGSDHSISARN 354
            M S PSSS QRQVGDNV+VNNMAP RQK IKHNSSNASSNGG +QQSAPQVS AATGSH SSS+DH Q                     RSGFV +DHPQQRNSFR+RNGGP+QRGDG+HHH NYGNRRDQDWNSRRN+NGRDMHVPPR  PRI+RPSLPPNSA FI PPP+RPFG HMGFHELA PVV  A PPP  DSLRGVPFVPPMPLY+AGPDPQLHSKIV QIDYYFSNENL+KD FLR+NMD QGWVPI LIAGFKKVM LTDNIQLI+DA+RTSS VEVQGDKIRR+NDW++WIMP+PVQFPNV +P VLNQD+LAE++ NIALE TI DGAGGPVVLPD S+H PAFG           E TG++ +HGSD S S RN
Sbjct:  136 MESTPSSSMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAGPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEVDIHGSDFSTSRRN 522

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072UER5|A0A072UER5_MEDTR (ATP synthase, A subunit OS=Medicago truncatula OX=3880 GN=MTR_5g022790 PE=4 SV=1)

HSP 1 Score: 569.311 bits (1466), Expect = 0.000e+0
Identity = 288/387 (74.42%), Postives = 315/387 (81.40%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQ---------------------RSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHH-NYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFG-----------ESTGQLGLHGSDHSISARN 354
            M S PSSS QRQVGDNV+VNNMAP RQK IKHNSSNASSNGG +QQSAPQVS AATGSH SSS+DH Q                     RSGFV +DHPQQRNSFR+RNGGP+QRGDG+HHH NYGNRRDQDWNSRRN+NGRDMHVPPR  PRI+RPSLPPNSA FI PPP+RPFG HMGFHELA PVV  A PPP  DSLRGVPFVPPMPLY+AGPDPQLHSKIV QIDYYFSNENL+KD FLR+NMD QGWVPI LIAGFKKVM LTDNIQLI+DA+RTSS VEVQGDKIRR+NDW++WIMP+PVQFPNV +P VLNQD+LAE++ NIALE TI DGAGGPVVLPD S+H PAFG           E TG++ +HGSD S S RN
Sbjct:    1 MESTPSSSMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAGPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSEITGEVDIHGSDFSTSRRN 387

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|G7JXM0|G7JXM0_MEDTR (ATP synthase, A subunit OS=Medicago truncatula OX=3880 GN=MTR_5g022790 PE=3 SV=1)

HSP 1 Score: 563.918 bits (1452), Expect = 0.000e+0
Identity = 280/369 (75.88%), Postives = 307/369 (83.20%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQ---------------------RSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHH-NYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSD 347
            M S PSSS QRQVGDNV+VNNMAP RQK IKHNSSNASSNGG +QQSAPQVS AATGSH SSS+DH Q                     RSGFV +DHPQQRNSFR+RNGGP+QRGDG+HHH NYGNRRDQDWNSRRN+NGRDMHVPPR  PRI+RPSLPPNSA FI PPP+RPFG HMGFHELA PVV  A PPP  DSLRGVPFVPPMPLY+AGPDPQLHSKIV QIDYYFSNENL+KD FLR+NMD QGWVPI LIAGFKKVM LTDNIQLI+DA+RTSS VEVQGDKIRR+NDW++WIMP+PVQFPNV +P VLNQD+LAE++ NIALE TI DGAGGPVVLPD S+H PAFG+ +  L L  S+
Sbjct:  136 MESTPSSSMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAGPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSE 504

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|G7JXM1|G7JXM1_MEDTR (ATP synthase, A subunit OS=Medicago truncatula OX=3880 GN=MTR_5g022790 PE=3 SV=1)

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 280/369 (75.88%), Postives = 307/369 (83.20%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQ---------------------RSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHH-NYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSD 347
            M S PSSS QRQVGDNV+VNNMAP RQK IKHNSSNASSNGG +QQSAPQVS AATGSH SSS+DH Q                     RSGFV +DHPQQRNSFR+RNGGP+QRGDG+HHH NYGNRRDQDWNSRRN+NGRDMHVPPR  PRI+RPSLPPNSA FI PPP+RPFG HMGFHELA PVV  A PPP  DSLRGVPFVPPMPLY+AGPDPQLHSKIV QIDYYFSNENL+KD FLR+NMD QGWVPI LIAGFKKVM LTDNIQLI+DA+RTSS VEVQGDKIRR+NDW++WIMP+PVQFPNV +P VLNQD+LAE++ NIALE TI DGAGGPVVLPD S+H PAFG+ +  L L  S+
Sbjct:    1 MESTPSSSMQRQVGDNVNVNNMAPTRQKSIKHNSSNASSNGGHTQQSAPQVSIAATGSHTSSSRDHTQSPRDHTQSPRDHAQSPRDHTQRSGFVPSDHPQQRNSFRHRNGGPHQRGDGSHHHHNYGNRRDQDWNSRRNYNGRDMHVPPRVSPRIIRPSLPPNSAPFIHPPPLRPFGGHMGFHELAAPVVLFAGPPPPIDSLRGVPFVPPMPLYYAGPDPQLHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKVMDLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPSPVQFPNVTSPEVLNQDMLAEKMRNIALETTIYDGAGGPVVLPDNSEHTPAFGDLSSPLQLSTSE 369

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4YK64|A0A9D4YK64_PEA (HTH La-type RNA-binding domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_024433 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 2.506e-178
Identity = 277/361 (76.73%), Postives = 301/361 (83.38%), Query Frame = 0

Query:    1 MGSMPSSSSQ--RQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSP--DSLRGVPFVPPM---PLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSISARN 354
            M SMPSSSSQ  RQV D+V++NNMA  RQKPIKHNSSNASSNGG  QQSAPQV+  +TGSHNS SKDH QRSG VS+DHPQQRNSFRNR+ GP+QRGDG+HHHNYGNRRDQDWNSRRNFNGRDMHVPPR  PRI+RPSLPPNS QFI P  +RPFG HMGFHELAPPVVFVAAPPP P  DSLRGVP+VPPM    LY+AGPDPQLHS IV QI+YYFSNENL++DTFLRQ MDDQGWVPIKLIAGFKKVM LTDNIQLI+DAVRTSS VEVQGDKIRR+ DW +WIMP PVQF NV TP VL  D L+E+VHNI+ E TI  GAGG +VLPDK         STGQ+G H SD SIS RN
Sbjct:    1 MESMPSSSSQTQRQVEDHVNLNNMASTRQKPIKHNSSNASSNGGHIQQSAPQVAIVSTGSHNSFSKDHTQRSGSVSSDHPQQRNSFRNRSNGPHQRGDGSHHHNYGNRRDQDWNSRRNFNGRDMHVPPRVSPRIIRPSLPPNSGQFIHPQSLRPFGGHMGFHELAPPVVFVAAPPPPPPLDSLRGVPYVPPMAHPALYYAGPDPQLHSMIVSQIEYYFSNENLVRDTFLRQKMDDQGWVPIKLIAGFKKVMLLTDNIQLIMDAVRTSSVVEVQGDKIRRKIDWMKWIMPPPVQFHNVETPGVLTHDTLSEEVHNISQETTIYAGAGG-LVLPDKI--------STGQVGHHDSDDSISTRN 352

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4YGI4|A0A9D4YGI4_PEA (HTH La-type RNA-binding domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_024433 PE=4 SV=1)

HSP 1 Score: 511.146 bits (1315), Expect = 2.088e-176
Identity = 277/361 (76.73%), Postives = 301/361 (83.38%), Query Frame = 0

Query:    1 MGSMPSSSSQ--RQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSP--DSLRGVPFVPPM---PLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSISARN 354
            M SMPSSSSQ  RQV D+V++NNMA  RQKPIKHNSSNASSNGG  QQSAPQV+  +TGSHNS SKDH QRSG VS+DHPQQRNSFRNR+ GP+QRGDG+HHHNYGNRRDQDWNSRRNFNGRDMHVPPR  PRI+RPSLPPNS QFI P  +RPFG HMGFHELAPPVVFVAAPPP P  DSLRGVP+VPPM    LY+AGPDPQLHS IV QI+YYFSNENL++DTFLRQ MDDQGWVPIKLIAGFKKVM LTDNIQLI+DAVRTSS VEVQGDKIRR+ DW +WIMP PVQF NV TP VL  D L+E+VHNI+ E TI  GAGG +VLPDK         STGQ+G H SD SIS RN
Sbjct:  213 MESMPSSSSQTQRQVEDHVNLNNMASTRQKPIKHNSSNASSNGGHIQQSAPQVAIVSTGSHNSFSKDHTQRSGSVSSDHPQQRNSFRNRSNGPHQRGDGSHHHNYGNRRDQDWNSRRNFNGRDMHVPPRVSPRIIRPSLPPNSGQFIHPQSLRPFGGHMGFHELAPPVVFVAAPPPPPPLDSLRGVPYVPPMAHPALYYAGPDPQLHSMIVSQIEYYFSNENLVRDTFLRQKMDDQGWVPIKLIAGFKKVMLLTDNIQLIMDAVRTSSVVEVQGDKIRRKIDWMKWIMPPPVQFHNVETPGVLTHDTLSEEVHNISQETTIYAGAGG-LVLPDKI--------STGQVGHHDSDDSISTRN 564

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445M440|A0A445M440_GLYSO (La-related protein 1C OS=Glycine soja OX=3848 GN=D0Y65_001725 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 3.795e-176
Identity = 267/364 (73.35%), Postives = 294/364 (80.77%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNN---MAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPM---PLYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGE----STGQLGLHGSDHSISARN 354
            +GS   SSSQR+V DN   NN   + P RQK +KH+SSNASSNGG +Q SAPQVS AATGS NSS KDH QRSGF SNDHPQQRNSFRNRNGG +QRGDG+HHHNYGNRRDQ+WN+ R+F  RD HVPPR  PR +RP  PPNSAQF  P PMRPFGS +GFHELAPP+VFVAAPPP PDSLRGVPFVPPM   PL+F GPDPQLHSKIV Q+DYYFSNENL+KD FLRQNMDDQGWVPIKLIAGF KVMHLTDNIQ+ILDA++TSS VEVQGDKIRR+NDW+RWIM  PVQF N  T  VLN D LAEQV NIALE +  DGAGG  V PD SQH+  FG+    ST Q+G+ GSDH I ARN
Sbjct:  136 LGSTSFSSSQREVSDNAITNNTNSLVPARQKSMKHHSSNASSNGGHAQHSAPQVSIAATGSRNSSPKDHTQRSGFASNDHPQQRNSFRNRNGGQHQRGDGSHHHNYGNRRDQEWNNNRSFGSRDTHVPPRVAPRFIRPPPPPNSAQFFHPSPMRPFGSPIGFHELAPPLVFVAAPPPPPDSLRGVPFVPPMPHHPLFFTGPDPQLHSKIVNQVDYYFSNENLVKDAFLRQNMDDQGWVPIKLIAGFNKVMHLTDNIQVILDAIQTSSVVEVQGDKIRRQNDWRRWIMHPPVQFSNATTIGVLNPDKLAEQVQNIALETSNYDGAGGLDVQPDTSQHRSTFGDLQQLSTSQVGIQGSDHFIPARN 499

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|K7K470|K7K470_SOYBN (HTH La-type RNA-binding domain-containing protein OS=Glycine max OX=3847 GN=100803372 PE=4 SV=1)

HSP 1 Score: 502.286 bits (1292), Expect = 9.359e-174
Identity = 266/366 (72.68%), Postives = 293/366 (80.05%), Query Frame = 0

Query:    1 MGSMPSSSSQRQVGDNVSVNN---MAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPP--NSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMP---LYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGE----STGQLGLHGSDHSISARN 354
            +GS   SSSQR+V DN   NN   + P RQK +KH+SSNASSNGG +Q S PQVS AATGS NSS KDH QRSGF SNDHPQQRNSFRNRNGG +QRGDG+HHHNYGNRRDQ+WN+ R+F  RD HVPPR  PR +RP  PP  NSAQF  P PMRPFGS +GFHELAPP+VFVAAPPP PDSLRGVPFVPPMP   L+F GPDPQLHSKIV Q+DYYFSNENL+KD FLRQNMDDQGWVPIKLIAGF KVMHLTDNIQ+ILDA++TSS VEVQGDKIRR+NDW+RWIM  PVQF N  T  VLN D LAEQV NIALE +  DGAGG  V PD SQH+  FG+    ST Q+G+ GSDH I ARN
Sbjct:  136 LGSTSFSSSQREVSDNARTNNTNSLVPARQKSMKHHSSNASSNGGHAQHSVPQVSIAATGSRNSSPKDHTQRSGFASNDHPQQRNSFRNRNGGQHQRGDGSHHHNYGNRRDQEWNNNRSFGSRDTHVPPRVAPRFIRPPPPPPPNSAQFFHPSPMRPFGSPIGFHELAPPLVFVAAPPPPPDSLRGVPFVPPMPHHPLFFTGPDPQLHSKIVNQVDYYFSNENLVKDAFLRQNMDDQGWVPIKLIAGFNKVMHLTDNIQVILDAIQTSSVVEVQGDKIRRQNDWRRWIMHPPVQFSNATTIGVLNPDKLAEQVQNIALETSNYDGAGGLDVQPDTSQHRSTFGDLQQLSTSQVGIQGSDHFIPARN 501

[Close]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8LWH5|A0A8B8LWH5_ABRPR (La-related protein 1C-like OS=Abrus precatorius OX=3816 GN=LOC113868871 PE=4 SV=1)

HSP 1 Score: 492.656 bits (1267), Expect = 9.634e-170
Identity = 263/358 (73.46%), Postives = 284/358 (79.33%), Query Frame = 0

Query:   11 RQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQVSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHHHNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPMRPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMP---LYFAGPDPQLHSKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNIQLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDVLAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFG-----------ESTGQLGLHGSDHSISARN 354
            R+V DN S N+  P  QK  KH+ SNAS NGG +QQSA QVS AAT  HNSS KDH QRSGFVSNDHPQ R+SFRNRNGGP+QRGDGAHHHNY NRR+QDWN+ ++FN RD HVPPR VPR +RP  PPNSAQF  PPP+R FG  +GFHELA P+VFVAAPPP PDSLRGVPFVP MP   L+F GPDPQLHSKIV QIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGF KV+HLTDNIQLILDAVRTSS VEVQGDKIRRRNDW +WIM  PV  PN     VLN D+LAEQVHNIALE T  DGAG   VLPD SQH+ AFG           E TGQ+G+ GSDHSISARN
Sbjct:  157 REVSDNASTNSAVPTCQKSFKHHGSNASFNGGHTQQSASQVSVAATEFHNSSPKDHTQRSGFVSNDHPQPRSSFRNRNGGPHQRGDGAHHHNYVNRRNQDWNTNQSFNNRDTHVPPRVVPRFIRPPPPPNSAQFFHPPPVRSFGGPIGFHELASPLVFVAAPPPPPDSLRGVPFVPAMPHHTLFFTGPDPQLHSKIVHQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFNKVVHLTDNIQLILDAVRTSSVVEVQGDKIRRRNDWSKWIM-HPV-LPNATNLGVLNPDMLAEQVHNIALETTNYDGAGALDVLPDTSQHRSAFGDLSSPLQLSTSEGTGQVGMEGSDHSISARN 512

The following BLAST results are available for this feature:

BLAST of evm.Ca_v2.0_23543 vs. Araport11
BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)

BLAST of evm.Ca_v2.0_23543 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
\|	5.532e-49	38.65	Symbols: LARP1b, AtLARP1b \| La related protein 1b ...	[more]
\|	8.297e-48	36.71	Symbols: LARP1c, AtLARP1c \| La related protein 1c ...	[more]
\|	3.667e-29	36.97	Symbols: LARP1c, AtLARP1c \| La related protein 1c ...	[more]
\|	6.252e-23	35.39	Symbols: LARP1a, AtLARP1a \| La related protein 1a ...	[more]
\|	6.757e-23	35.39	Symbols: LARP1a, AtLARP1a \| La related protein 1a ...	[more]
\|	6.760e-23	35.39	Symbols: LARP1a, AtLARP1a \| La related protein 1a ...	[more]
\|	1.181e-15	38.46	Symbols: LARP1b, AtLARP1b \| La related protein 1b ...	[more]
\|	5.914e-11	37.96	Symbols: LARP6a, AtLARP6a \| La related protein 6a ...	[more]
\|	9.372e-11	37.96	Symbols: LARP6a, AtLARP6a \| La related protein 6a ...	[more]
\|	1.085e-10	37.96	Symbols: LARP6a, AtLARP6a \| La related protein 6a ...	[more]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q8RWR2\|LRP1B_ARATH	5.371e-48	38.65	La-related protein 1B OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q94K80\|LRP1C_ARATH	8.076e-47	36.71	La-related protein 1C OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q940X9\|LRP1A_ARATH	6.183e-22	35.39	La-related protein 1A OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q659C4\|LAR1B_HUMAN	2.787e-18	49.38	La-related protein 1B OS=Homo sapiens OX=9606 GN=L...	[more]
sp\|Q6PKG0\|LARP1_HUMAN	5.851e-18	42.42	La-related protein 1 OS=Homo sapiens OX=9606 GN=LA...	[more]
sp\|Q6ZQ58\|LARP1_MOUSE	1.901e-17	36.72	La-related protein 1 OS=Mus musculus OX=10090 GN=L...	[more]
sp\|Q9P6K0\|YLA3_SCHPO	5.781e-16	33.98	Uncharacterized HTH La-type RNA-binding protein C1...	[more]
sp\|J9VT60\|LARP1_CRYNH	2.377e-14	34.86	La RNA-binding domain-containing protein LHP1 OS=C...	[more]
sp\|D5MCN2\|LARP1_CAEEL	7.698e-14	34.97	La-related protein 1 OS=Caenorhabditis elegans OX=...	[more]
sp\|Q9VAW5\|LARP_DROME	1.273e-13	33.04	La-related protein 1 OS=Drosophila melanogaster OX...	[more]

BLAST of evm.Ca_v2.0_23543 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S2YZ22\|A0A1S2YZ22_CICAR	0.000e+0	100.00	La-related protein 1B-like OS=Cicer arietinum OX=3...	[more]
tr\|A0A396HM34\|A0A396HM34_MEDTR	0.000e+0	74.42	Putative winged helix-turn-helix DNA-binding domai...	[more]
tr\|A0A072UER5\|A0A072UER5_MEDTR	0.000e+0	74.42	ATP synthase, A subunit OS=Medicago truncatula OX=...	[more]
tr\|G7JXM0\|G7JXM0_MEDTR	0.000e+0	75.88	ATP synthase, A subunit OS=Medicago truncatula OX=...	[more]
tr\|G7JXM1\|G7JXM1_MEDTR	0.000e+0	75.88	ATP synthase, A subunit OS=Medicago truncatula OX=...	[more]
tr\|A0A9D4YK64\|A0A9D4YK64_PEA	2.506e-178	76.73	HTH La-type RNA-binding domain-containing protein ...	[more]
tr\|A0A9D4YGI4\|A0A9D4YGI4_PEA	2.088e-176	76.73	HTH La-type RNA-binding domain-containing protein ...	[more]
tr\|A0A445M440\|A0A445M440_GLYSO	3.795e-176	73.35	La-related protein 1C OS=Glycine soja OX=3848 GN=D...	[more]
tr\|K7K470\|K7K470_SOYBN	9.359e-174	72.68	HTH La-type RNA-binding domain-containing protein ...	[more]
tr\|A0A8B8LWH5\|A0A8B8LWH5_ABRPR	9.634e-170	73.46	La-related protein 1C-like OS=Abrus precatorius OX...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	FUNFAM	G3DSA:1.10.10.10:FF:000131		coord: 191..279 e-value: 2.2E-33 score: 116.1
None	No IPR available	CDD	cd07323	LAM	coord: 200..272 e-value: 1.81634E-34 score: 119.559
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 193..281 e-value: 1.6E-31 score: 109.9
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 203..258 e-value: 1.8E-19 score: 80.7
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 193..282 score: 25.978958
IPR045180	La domain containing protein	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 35..289
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 190..282

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca8_v2.0:6099414..6105602-
coding sequence from alignment at Ca8_v2.0:6099414..6105602-

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_23543.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23543.1; Name=evm.Ca_v2.0_23543; organism=Cicer arietinum; type=mRNA; length=1065bp
ATGGGAAGCATGCCTTCTTCCTCTTCGCAGAGACAAGTAGGTGATAATGT
AAGCGTAAACAATATGGCACCAATTCGCCAGAAACCAATCAAACACAACA
GTTCAAATGCATCTTCTAATGGGGGCCAGTCGCAGCAGTCTGCACCCCAA
GTTTCAACAGCAGCAACGGGATCCCACAACTCCTCTTCCAAAGATCATAT
ACAGAGAAGTGGATTTGTGTCCAATGATCATCCACAACAGCGCAATTCAT
TTAGAAATCGTAATGGTGGTCCAAATCAGCGCGGGGATGGTGCTCACCAT
CATAATTATGGTAACAGGCGGGATCAAGACTGGAATAGTCGTCGAAATTT
CAATGGTAGAGACATGCATGTACCCCCAAGAAATGTTCCAAGAATTTTAA
GGCCATCTCTGCCTCCTAATTCTGCGCAGTTTATTCCTCCACCGCCAATG
AGGCCTTTTGGTAGCCACATGGGATTCCACGAACTAGCACCTCCAGTGGT
ATTTGTTGCAGCTCCACCTCCATCCCCAGATTCACTAAGAGGTGTTCCCT
TTGTGCCACCAATGCCTCTTTATTTTGCAGGGCCAGACCCTCAGTTGCAT
AGTAAGATAGTCATACAGATTGACTACTATTTTAGCAATGAAAATTTAAT
TAAAGATACATTCTTGCGGCAGAACATGGATGACCAGGGCTGGGTTCCAA
TAAAATTAATTGCAGGCTTCAAAAAAGTCATGCATTTGACTGACAATATC
CAGCTTATATTAGATGCAGTTCGAACTTCATCAGCTGTTGAAGTGCAGGG
TGACAAAATAAGGAGGCGAAATGATTGGAAGAGATGGATCATGCCTACTC
CTGTTCAGTTTCCTAATGTTAACACTCCTGTAGTGTTGAACCAAGACGTG
CTGGCAGAGCAAGTGCACAATATTGCTCTGGAGAAAACTATCAATGATGG
TGCAGGAGGACCAGTTGTTCTGCCAGATAAGTCTCAACATCAACCTGCAT
TTGGGGAAAGTACTGGTCAACTTGGTCTTCATGGCTCAGATCACTCTATT
TCAGCGAGAAATTAG

protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_23543.1

>drCicArie.Frontier.2.0.Ca_v2.0_23543.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23543.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_23543.1; organism=Cicer arietinum; type=polypeptide; length=354bp
MGSMPSSSSQRQVGDNVSVNNMAPIRQKPIKHNSSNASSNGGQSQQSAPQ
VSTAATGSHNSSSKDHIQRSGFVSNDHPQQRNSFRNRNGGPNQRGDGAHH
HNYGNRRDQDWNSRRNFNGRDMHVPPRNVPRILRPSLPPNSAQFIPPPPM
RPFGSHMGFHELAPPVVFVAAPPPSPDSLRGVPFVPPMPLYFAGPDPQLH
SKIVIQIDYYFSNENLIKDTFLRQNMDDQGWVPIKLIAGFKKVMHLTDNI
QLILDAVRTSSAVEVQGDKIRRRNDWKRWIMPTPVQFPNVNTPVVLNQDV
LAEQVHNIALEKTINDGAGGPVVLPDKSQHQPAFGESTGQLGLHGSDHSI
SARN

mRNA from alignment at Ca8_v2.0:6099414..6105602-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>drCicArie.Frontier.2.0.Ca_v2.0_23543.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23543.1; Name=evm.Ca_v2.0_23543; organism=Cicer arietinum; type=mRNA; length=6189bp; location=Sequence derived from: Ca8_v2.0:6099414..6105602- (Cicer arietinum
AAAAAATATAGTAGTATGTGCGTAAACTCCAGCGTATAGTGTGGCATCTG
AATCGTTCCACACAGGTCTTTCGCTGGAACATATTGTTCTCTCCCACGCA
GTCACATAAATAAAACAAACTTCTTCTCTTTACTCACTGCGATCAGATCG
CTAAATTTTTGTAACCCTTATTTATTGCATTTTCTTTTGCATTTTTCATT
CAAACCTAACCCTCTAATTTTTGGAATAAATTTGTCTCTGCCCTAAAATC
ATCATTCGCTGCTATCTATGGCCATGATCGGTAACCTCCAATCATCCAAT
AACCTTCAATCACGACGGCTTCCCGTCTCTTCTCCGTGGAACCAGGTTGT
TTGCGGTGAATCGGAGTCTGTTGCCACTGCTCTTTCATTGCCGCCGACGG
AGGACCATTTTCCGTCCGCAACCACTCCGGTTGATGATTCTTGCTCAACC
GCAGAGAGCTCCGACAACGGCGGTGAGCCCAATGGAGGAACTGCTAAGAG
GCCTGTTTGGAATAAGCCTTCTTCCAACTGCGCAGCTTCCGAGGTTCGGC
CGGTCATCGACGCACACTCTTGGCCAGCGTTGTCTGAGTCCGCTAGAGTT
ACTACCAAATCGGAGCCATCGAAGGGCTTGTTAGATGGATCTTCTGTTCC
TCAATCGCAGGTTTGTTTCCTATGCGATTCAGTATTTCAATTATTACGAT
TATTACAATTTACAATACCTAAAATTTCAATAGTTAGAGTTAATCACTTT
TATAGGTTGTTGAATTGATTTTTCATGTGTTTGCAATAGTTTTCTTTTCG
TATGAAATTAACTTCAGCGATGATATCATGCATAGTAAAGGCACAAGTAA
ATTTCAGTAGGTTAGGATCACTATGTATTTTAAATTAACTTAATCAAAGA
TGGATGCGCCTTTATGTTATGTACTTCACAATTTGGCAAATGCAAATACT
TTTTTGGTATGAAGTTATGGAAAATACACAACTGATGACTTAGTATGCGA
TGTGGGAATAATATTAGATCAAGTTGCCACGTCTTAGCAATCAGATGGAT
TGTGAAATGCTGTCATTTTTCACTCTGTTGGCATATTGGTATATGTTCTT
AGTTATATACTTTTATTGTTTGTTTATATGCACATAGATATTGCTATTGT
TTTAAGTCCTGTTATAGGGTATGGGAAGCATGCCTTCTTCCTCTTCGCAG
AGACAAGTAGGTGATAATGTAAGCGTAAACAATATGGCACCAATTCGCCA
GAAACCAATCAAACACAACAGTTCAAATGCATCTTCTAATGGGGGCCAGT
CGCAGCAGTCTGCACCCCAAGTTTCAACAGCAGCAACGGGATCCCACAAC
TCCTCTTCCAAAGATCATATACAGAGAAGTGGATTTGTGTCCAATGATCA
TCCACAACAGCGCAATTCATTTAGAAATCGTAATGGTGGTCCAAATCAGC
GCGGGGATGGTGCTCACCATCATAATTATGGTAACAGGCGGGATCAAGAC
TGGAATAGTCGTCGAAATTTCAATGGTAGAGACATGCATGTACCCCCAAG
AAATGTTCCAAGAATTTTAAGGCCATCTCTGCCTCCTAATTCTGCGCAGT
TTATTCCTCCACCGCCAATGAGGCCTTTTGGTAGCCACATGGGATTCCAC
GGTATGTATGGAACATTAATGTCTAGAAATGTGTTTCAGGATATTAATAT
TCTCTGATGTTTGCATTCATTTTCAGAACTAGCACCTCCAGTGGTATTTG
TTGCAGCTCCACCTCCATCCCCAGATTCACTAAGAGGTGTTCCCTTTGTG
CCACCAATGCCTCTTTATTTTGCAGGGCCAGACCCTCAGTTGCATAGTAA
GATAGTCATACAGATTGACTACTATTTTAGGTACTACTATTACTTTGGTT
TGTCAGTTTCTTATTTTAGTTATTTCATTGCCTTGTATTGCTTTAGAAAA
TTGATAATCGACACTGACACAACTTTTCTATTGCAGCAATGAAAATTTAA
TTAAAGATACATTCTTGCGGCAGAACATGGATGACCAGGGCTGGGTTCCA
ATAAAATTAATTGCAGGCTTCAAAAAAGTGAGTAGTTTGGGGTATATGAT
TGCTTTTACGTGTGTGTGATAGAAAGAGGAAATGGTTTATACTTTTGTTT
TTATTGCAGACTCATAAGATATATATATATATATTTATTGGTTTTTTGAC
CGGTACCCGTTATATTGATTATTAATATTTTAAAATGTGTTTATAAATAG
ATTAAACTAATATGGGCAGAGGATCATGTAGTTTGATATGTGTATAGTGA
CTAAAATTTATTTTTCCAATTTTTTTATTATTAAAATTTCACTTTTTATT
ATTAATAAGGGTCTAATTTTCAATATTAGAACATAATTTCCAAAATCTAT
TACTTGTATATTTATTTTTAGGAGGATCCGAAAATTATGAAATTAAAGAT
CTAAATTCATTGATTTGCTTATGAGAAAAAAGAGATGTAGAGAGATACTA
GAGAGTGAGAGAGATAGTAGATAGGAGTTAGATGGAGAGATAGAGATGCA
TAAGATATATATATATATATATATATATATATATATATATATATATATAT
ATATATGTCTGTGTGCGCGGGCGCGCATACATAGTTATGCACTTCTTAAT
TTTATAGTAATAGTTAAACTACTGCTAAAGTATAGAAGGATTAAATTATA
TATGATATGATTGTATTTATGGCAATCCGGCATACCAATGGTGGTAGCAT
GTGTTGACTCCCCATGGCTGCAGAGTTTGTCATATTGCCAAAGCTAGCAT
CCTACCCTATCTAGTTCAAATTGTCTGAGGAGTTAAGCTAGCATTTCTCC
TAATTTTGTGCTATATTGTCAATCCCATCGCGATCCCGCACAATCCCACT
ATCCCAGTGCGGTGGAGGGGCTGGCCGCGAATCCTGTTATCCCAGCCCGA
CCTTTCTCTTGGGATTTTTCAAAAACACAAGTTTTATTTTTTTTTTTGTT
CTTCATTAAGGGTATCTAGGTCATTCCGCACCCACTTAAGCCCTAATTTT
TATTATTATAAACCCACATAGGGGTTGGTTCAGCATCATGAAAAAAAACC
CGTTTTCGTTCTTCCTCTGTTTCGTTCTTGCTCTATCATTTTCGTTCTTT
TCTTGCTCCATTCAGCATTGTCCTTTCCGTTTTTGCTCTGTTCAGCATCG
TATGTTCTTGCTATGTTGTTTTTGTTCTTTTTGTAACTTTGTTTTGTCTA
CTCTGTTTCTTCTCCTCTTTTCTCTATTTTGTTGATTACAATTAGAACTT
GATTTTGACGTTGGACTTTAGTTATTAAGTATGATTGCCCCTTTAATTTT
GAGTATTTTGCTATTTTTTTATAAGTATTTTTGTATACTGTTTGTATTTT
ATGTTTAGTTTATATACTGTTTTTTTGCCTTCGCAATAGAGGTCATACAA
CTATCCCATTTTTTTAGGGTTCGGCACTCCGTGCCATGATCTGAGACTAA
CAACATAGATTAACTATGTTGTGTACCACTATTTTGTTGTTTACTGACTT
TTTAAAAAAGTGCATAACTCTTTCATATTAAAATGATATTTTTTCTGTAA
TCTATATCTTGTTTGAATATCAGTATGATAAAAACGTGAAACATCGCCTA
CCGGGTTTTATATGTTACTATGGAAATTGTTTGCCTGTGTTAGTCTTCTG
TGATAGGTGCCTTTTCTCAATCTCCCTTCACTGGAAAAACATGGATTTGA
TTGTCAAATATAATCATACCTGAATAGTATGTACGAGTACGATGAACCAT
ATCAGAAGAATAAAAAGCTTTTAAGAAGAGTTAAAATTTGATCCTTTAAT
TTTCAATTTTTAATTAGTGTTTCTTTTGTGTTTTGTTCTTTTCTTCAATA
TGCTTCTACTATCACCACATAACAACTTAAGGCTCTATTTGGAAGTTTAG
GAGTTTAGGGGAGGGGAGAGGGGGACTTTGAGAAAAATGAAGGAGGAAAG
GGAAATAGAAGGAAGGCTAGTTCCCCAACTTGAATTGGGGTTTATTTTTC
TTCATAATACAAAATCTCCGCACTACGGAGAAACTTAAAAACCCATCAAA
GGAGGATTTTGGAAAGCTTATAAAAAAATCTTCAAATCCTTTCCATCTTC
TTTATAATAGTATCAAAATTGAAAATATATGAATAATAAGTATTCTCTTC
TCATTCTCTACAAAAACACTTTCTTAAATAAGGCTAGATTTATCTCTTTA
TCCCTCTTCTCCCCTCCCCCTAAACCCTCTTATTCAAACTCTCAAATGAA
GCCCAAGTAGCTTTATTCAATGGATACAAGCATTGTGGTGTTTGTGATAT
TATGGTTGCAGACCTACTAATTGTATTTAAGCATAACCTGCAAAATTGTA
TGCTCGGGTGTATACAGTGATAAAGAGATAATTATGACGATACATTAACA
ATCATAATTATGACGATACATGTGAGATGGAACTGGATAAGTAAATGTGT
TTCACTTCGTAATAACACCTGTTTCAGACTCCAGTTTGTAGTTTATACTT
ATATTTATGGTGTTGACTATTTTGTGGTATTTGTCTTTTGTCATTTAAAT
TTTGTACTGTGCTGTTTTTTTGCTCTCCAAACCCATCTTAGCTGTCTTAA
AAATTCTTCTATTTGGATGTAAGTTGTAGCATTATTCTTTAATTAAAAAT
ATTTCCATCTCTCAGGTCATGCATTTGACTGACAATATCCAGCTTATATT
AGATGCAGTTCGAACTTCATCAGCTGTTGAAGTGCAGGTATTTTTCTGAA
TCTTGCATCAGGAGGTTAAGTTTATAATTTGAATGTTGACACAATTTCAA
TTAGAATATATAATAAAACTGATAATTTTCATATTCCTTGTTCTATCAAT
TTATTGAAACTCTTGTTTTGAATTTCTTTCATTCTCATTTTCATTCTTCT
ATTAATTATTTGCACTGGAGATTTGAGTTTATACTTTCCATGTAGATACA
ATACCATTTGGAATATATAGGATAAAAAATTACTAGATTATTCTAAGTTT
CCCGGTTCTATCAATTTGTTGAACCTTTTGTTCTGTTTTTCTTTTGTTAT
TTGCGTTGTAGGGTGACAAAATAAGGAGGCGAAATGATTGGAAGAGATGG
ATCATGCCTACTCCTGTTCAGTTTCCTAATGTTAACACTCCTGTAGTGTT
GAACCAAGACGTGCTGGCAGAGCAAGTGCACAATATTGCTCTGGAGAAAA
CTATCAATGATGGTGCAGGAGGACCAGTTGTTCTGCCAGATAAGTCTCAA
CATCAACCTGCATTTGGGGAAAGTACTGGTCAACTTGGTCTTCATGGCTC
AGATCACTCTATTTCAGCGAGAAATTAGAGCTGCAGATGTGCTTTGGCAC
TCTGGTTTTTTGGGAGAGACTTTAAGAGTTAAGGAAAACAATGGAAGCAG
GTATCTAAAAATCATCTCAGTTTTTTGCAAATGATGTCTCACGAGACATA
TTTAGTGTTAACATGATTGAGGAATGGGAAGAAAATAACTATTACAAAAA
ACAAAAACAAGACTAAATGGTAAGTTCAATCCCCCTTCCCTCAAAAAAAT
GAAAAAAAAATGGTGTTTTATTTTTTTTATTTTTATTTTCGGTTATTGTG
GAGCTAGTTGCACAACTATTGTGATTACTTGTTTTTTGGGATATAAATAT
ATATGTTCTTAGACTTGGGGGATGATGATTTTGTTTGCTTGAATTCGCTG
GATAATTTTTTATTTGTGTTGTTTCCCGACTGCCCCTCAGCTGCTTTTTA
TAATCTGGGGTCAGCTTCCCACCAGTTTTAGGTGTTTTATATTATTAGTT
CAGTAGTGTTGTATGTTGAATCTGTCTGATAACTACCTGCTACCACTGAG
GGAAGATGAAATGTGGCTTTCTGCTGGTTGATCTTCTCTTAGGACCACAT
GAAACAATGATTGCTTGATGTCCCTTGCTGTATTCCATCATTGATATTTA
TAGCACATTTCAGTTTTCATGTTTGTTAAAACTCAAATTCCGACCCCATA
AGTGGACCCATGTGAGGTCATAAACATTTACGACAAACTATGCAAGTTAC
AGTTTGTGCATGTTTGAGATGACTTTTCTATCTAAACCTGAAGTTCCATG
GGACCTTATTTCACATCTATATTAACTTTTATTTATTTA

Coding sequence (CDS) from alignment at Ca8_v2.0:6099414..6105602-

>drCicArie.Frontier.2.0.Ca_v2.0_23543.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_23543.1; Name=evm.Ca_v2.0_23543; organism=Cicer arietinum; type=CDS; length=1065bp; location=Sequence derived from: Ca8_v2.0:6099414..6105602- (Cicer arietinum
ATGGGAAGCATGCCTTCTTCCTCTTCGCAGAGACAAGTAGGTGATAATGT
AAGCGTAAACAATATGGCACCAATTCGCCAGAAACCAATCAAACACAACA
GTTCAAATGCATCTTCTAATGGGGGCCAGTCGCAGCAGTCTGCACCCCAA
GTTTCAACAGCAGCAACGGGATCCCACAACTCCTCTTCCAAAGATCATAT
ACAGAGAAGTGGATTTGTGTCCAATGATCATCCACAACAGCGCAATTCAT
TTAGAAATCGTAATGGTGGTCCAAATCAGCGCGGGGATGGTGCTCACCAT
CATAATTATGGTAACAGGCGGGATCAAGACTGGAATAGTCGTCGAAATTT
CAATGGTAGAGACATGCATGTACCCCCAAGAAATGTTCCAAGAATTTTAA
GGCCATCTCTGCCTCCTAATTCTGCGCAGTTTATTCCTCCACCGCCAATG
AGGCCTTTTGGTAGCCACATGGGATTCCACGAACTAGCACCTCCAGTGGT
ATTTGTTGCAGCTCCACCTCCATCCCCAGATTCACTAAGAGGTGTTCCCT
TTGTGCCACCAATGCCTCTTTATTTTGCAGGGCCAGACCCTCAGTTGCAT
AGTAAGATAGTCATACAGATTGACTACTATTTTAGCAATGAAAATTTAAT
TAAAGATACATTCTTGCGGCAGAACATGGATGACCAGGGCTGGGTTCCAA
TAAAATTAATTGCAGGCTTCAAAAAAGTCATGCATTTGACTGACAATATC
CAGCTTATATTAGATGCAGTTCGAACTTCATCAGCTGTTGAAGTGCAGGG
TGACAAAATAAGGAGGCGAAATGATTGGAAGAGATGGATCATGCCTACTC
CTGTTCAGTTTCCTAATGTTAACACTCCTGTAGTGTTGAACCAAGACGTG
CTGGCAGAGCAAGTGCACAATATTGCTCTGGAGAAAACTATCAATGATGG
TGCAGGAGGACCAGTTGTTCTGCCAGATAAGTCTCAACATCAACCTGCAT
TTGGGGAAAGTACTGGTCAACTTGGTCTTCATGGCTCAGATCACTCTATT
TCAGCGAGAAATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR006630	La_HTH
IPR045180	La_dom_prot
IPR036390	WH_DNA-bd_sf

Search form

evm.Ca_v2.0_23543