evm.Ca_v2.0_10586

Transcript Overview


Name	evm.Ca_v2.0_10586
Unique Name	drCicArie.Frontier.2.0.Ca_v2.0_10586.1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	315

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca4_v2.0	chromosome	Ca4_v2.0:30043310..30043831 -	Cicer arietinum cv. CDC Frontier genome v2.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum cv. CDC Frontier genome v2.0	2024-06-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot	2024-07-26
InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL	2024-07-26

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
carccaR241	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carccaR251	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carccaR283	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carvunR217	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
carvunR249	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.Ca_v2.0_10586	drCicArie.Frontier.2.0.Ca_v2.0_10586	Cicer arietinum	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.cds.Ca_v2.0_10586.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_10586.1	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_10586.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_10586.1_2	Cicer arietinum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_10586.1.exon2	drCicArie.Frontier.2.0.Ca_v2.0_10586.1.exon2	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_10586.1.exon1	drCicArie.Frontier.2.0.Ca_v2.0_10586.1.exon1	Cicer arietinum	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_10586.1	drCicArie.Frontier.2.0.Ca_v2.0_10586.1	Cicer arietinum	polypeptide
drCicArie.Frontier.2.0.Ca_v2.0_10586.1	drCicArie.Frontier.2.0.Ca_v2.0_10586.1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of evm.Ca_v2.0_10586 vs. Araport11
Match: | (Symbols: RPOB | RNA polymerase subunit beta | chrc:23111-26329 REVERSE LENGTH=1072)

HSP 1 Score: 71.2478 bits (173), Expect = 1.175e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q0G9X0|RPOB_DAUCA (DNA-directed RNA polymerase subunit beta OS=Daucus carota OX=4039 GN=rpoB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.826e-15
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ STYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTSTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q49L06|RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.293e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q589C0|RPOB_SILLA (DNA-directed RNA polymerase subunit beta OS=Silene latifolia OX=37657 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.475e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8S8X9|RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.851e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|P06271|RPOB_TOBAC (DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum OX=4097 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.947e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q3C1G7|RPOB_NICSY (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 9.947e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q68S14|RPOB_PANGI (DNA-directed RNA polymerase subunit beta OS=Panax ginseng OX=4054 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.014e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  354 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 398

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q33C46|RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.024e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9BBS9|RPOB_LOTJA (DNA-directed RNA polymerase subunit beta OS=Lotus japonicus OX=34305 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.044e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q2L8Z9|RPOB_GOSHI (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.054e-14
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  353 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1R3G213|A0A1R3G213_9ROSI (DNA-directed RNA polymerase (Fragment) OS=Corchorus olitorius OX=93759 GN=COLO4_37399 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.261e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   88 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 132

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4Y5RB85|A0A4Y5RB85_9DIPS (DNA-directed RNA polymerase subunit beta OS=Heptacodium miconioides OX=137004 GN=rpoB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.918e-13
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0

Query:   30 RKRLLR--KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            R++L+R  K+L  + P+ +TY+SFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  345 RRKLIRIPKNLITSTPLTTTYQSFFGLHPLSQVLDRTNPLTHIVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|G4XYK8|G4XYK8_BRACI (DNA-directed RNA polymerase OS=Brassica carinata OX=52824 GN=orf165 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.047e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   58 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 102

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1R3KJL5|A0A1R3KJL5_COCAP (DNA-directed RNA polymerase OS=Corchorus capsularis OX=210143 GN=CCACVL1_01337 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.085e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   88 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 132

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A022QSD2|A0A022QSD2_ERYGU (DNA-directed RNA polymerase (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a020595mg PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.373e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:  146 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 190

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5MZ31|A0A2H5MZ31_CITUN (DNA-directed RNA polymerase (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_284060 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.032e-13
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TY+SFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   54 QNLVTSTPLTTTYDSFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 98

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A650GBN2|A0A650GBN2_RAPSA (DNA-directed RNA polymerase OS=Raphanus sativus OX=3726 GN=orf210a PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.078e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   58 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 102

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2G2XBY2|A0A2G2XBY2_CAPBA (DNA-directed RNA polymerase OS=Capsicum baccatum OX=33114 GN=CQW23_03484 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.685e-13
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPLT--VHGRKLSYLG 78
            ++L  + P+ +TYESFFGLHPLSQVLDRTNPLT  VHGRKLSYLG
Sbjct:   54 QNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLG 98

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7T8E7E4|A0A7T8E7E4_EUOMA (DNA-directed RNA polymerase subunit beta OS=Euonymus maackii OX=4309 GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.132e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPL--TVHGRKLSYLG 78
            +SL ++ P+ +TYESFFGLHPLSQVLDRTNPL  TVHGRKLSYLG
Sbjct:  353 QSLVLSTPLTTTYESFFGLHPLSQVLDRTNPLTQTVHGRKLSYLG 397

[Close]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8E7IV22|A0A8E7IV22_EUOMA (DNA-directed RNA polymerase subunit beta OS=Euonymus maackii OX=4309 GN=rpoB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.222e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0

Query:   36 KSLWVTKPIRSTYESFFGLHPLSQVLDRTNPL--TVHGRKLSYLG 78
            +SL ++ P+ +TYESFFGLHPLSQVLDRTNPL  TVHGRKLSYLG
Sbjct:  353 QSLVLSTPLTTTYESFFGLHPLSQVLDRTNPLTQTVHGRKLSYLG 397

The following BLAST results are available for this feature:

BLAST of evm.Ca_v2.0_10586 vs. Araport11
BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)

BLAST of evm.Ca_v2.0_10586 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 1


Match Name	E-value	Identity	Description
\|	1.175e-15	75.56	Symbols: RPOB \| RNA polymerase subunit beta \| chrc...	[more]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q0G9X0\|RPOB_DAUCA	5.826e-15	77.78	DNA-directed RNA polymerase subunit beta OS=Daucus...	[more]
sp\|Q49L06\|RPOB_EUCGG	9.293e-15	75.56	DNA-directed RNA polymerase subunit beta OS=Eucaly...	[more]
sp\|Q589C0\|RPOB_SILLA	9.475e-15	75.56	DNA-directed RNA polymerase subunit beta OS=Silene...	[more]
sp\|Q8S8X9\|RPOB_ATRBE	9.851e-15	75.56	DNA-directed RNA polymerase subunit beta OS=Atropa...	[more]
sp\|P06271\|RPOB_TOBAC	9.947e-15	75.56	DNA-directed RNA polymerase subunit beta OS=Nicoti...	[more]
sp\|Q3C1G7\|RPOB_NICSY	9.947e-15	75.56	DNA-directed RNA polymerase subunit beta OS=Nicoti...	[more]
sp\|Q68S14\|RPOB_PANGI	1.014e-14	75.56	DNA-directed RNA polymerase subunit beta OS=Panax ...	[more]
sp\|Q33C46\|RPOB_NICTO	1.024e-14	75.56	DNA-directed RNA polymerase subunit beta OS=Nicoti...	[more]
sp\|Q9BBS9\|RPOB_LOTJA	1.044e-14	75.56	DNA-directed RNA polymerase subunit beta OS=Lotus ...	[more]
sp\|Q2L8Z9\|RPOB_GOSHI	1.054e-14	75.56	DNA-directed RNA polymerase subunit beta OS=Gossyp...	[more]

BLAST of evm.Ca_v2.0_10586 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1R3G213\|A0A1R3G213_9ROSI	3.261e-13	75.56	DNA-directed RNA polymerase (Fragment) OS=Corchoru...	[more]
tr\|A0A4Y5RB85\|A0A4Y5RB85_9DIPS	3.918e-13	69.81	DNA-directed RNA polymerase subunit beta OS=Heptac...	[more]
tr\|G4XYK8\|G4XYK8_BRACI	6.047e-13	75.56	DNA-directed RNA polymerase OS=Brassica carinata O...	[more]
tr\|A0A1R3KJL5\|A0A1R3KJL5_COCAP	6.085e-13	75.56	DNA-directed RNA polymerase OS=Corchorus capsulari...	[more]
tr\|A0A022QSD2\|A0A022QSD2_ERYGU	6.373e-13	75.56	DNA-directed RNA polymerase (Fragment) OS=Erythran...	[more]
tr\|A0A2H5MZ31\|A0A2H5MZ31_CITUN	7.032e-13	73.33	DNA-directed RNA polymerase (Fragment) OS=Citrus u...	[more]
tr\|A0A650GBN2\|A0A650GBN2_RAPSA	8.078e-13	75.56	DNA-directed RNA polymerase OS=Raphanus sativus OX...	[more]
tr\|A0A2G2XBY2\|A0A2G2XBY2_CAPBA	8.685e-13	75.56	DNA-directed RNA polymerase OS=Capsicum baccatum O...	[more]
tr\|A0A7T8E7E4\|A0A7T8E7E4_EUOMA	9.132e-13	77.78	DNA-directed RNA polymerase subunit beta OS=Euonym...	[more]
tr\|A0A8E7IV22\|A0A8E7IV22_EUOMA	9.222e-13	77.78	DNA-directed RNA polymerase subunit beta OS=Euonym...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1100.10		coord: 5..96 e-value: 9.3E-6 score: 26.8

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca4_v2.0:30043310..30043831-
coding sequence from alignment at Ca4_v2.0:30043310..30043831-

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_10586.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10586.1; Name=evm.Ca_v2.0_10586; organism=Cicer arietinum; type=mRNA; length=315bp
ATGTCATCATCACGGAAAAATGTCGAGCCAACGGGGTCAGGTGCCAGTAG
TGACAATGGTAAAGGGGGGAGGTGGAGACTGTTGAACCGGAAGAGATTGC
TCAGGAAGAGTTTATGGGTAACAAAGCCGATAAGATCCACTTATGAATCT
TTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACCAATCCATT
GACAGTTCATGGGAGAAAGTTGAGTTATTTGGGTCATGAGCAGCCCAACC
CTCTTAGAGCAAAGGATAAGGCTCGACTGCCCAGAGAGGACCCAACCTTT
GAAAGGAAGGCATGA

protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_10586.1

>drCicArie.Frontier.2.0.Ca_v2.0_10586.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10586.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_10586.1; organism=Cicer arietinum; type=polypeptide; length=104bp
MSSSRKNVEPTGSGASSDNGKGGRWRLLNRKRLLRKSLWVTKPIRSTYES
FFGLHPLSQVLDRTNPLTVHGRKLSYLGHEQPNPLRAKDKARLPREDPTF
ERKA

mRNA from alignment at Ca4_v2.0:30043310..30043831-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>drCicArie.Frontier.2.0.Ca_v2.0_10586.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10586.1; Name=evm.Ca_v2.0_10586; organism=Cicer arietinum; type=mRNA; length=522bp; location=Sequence derived from: Ca4_v2.0:30043310..30043831- (Cicer arietinum
ATGTCATCATCACGGAAAAATGTCGAGCCAACGGGGTCAGGTGCCAGTAG
TGACAATGGTAAAGGGGGGAGGTGGAGACTGTTGAACCGGAAGAGATTGC
TCAGGAAGAGTTTATGGGTAACAAAGCCGATAAGTGTGTAGTCAAGATGC
GAGTTTAACGAGCGAGGAGAGTGATTTGGCCCATATAAACGAGGATCTGG
AAGAGAGTGTTTATATTGGGTCAACTATGGCAATGACTGACCATTTTTAT
AATCAATCTACGACGACTATTTTCTATTCTAGTTTAAAATCGTCTAAAAC
TTCGGCTCCTTCTAATTACGATAGTCATGGTATTTTTGAGGATCCACTTA
TGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACCA
ATCCATTGACAGTTCATGGGAGAAAGTTGAGTTATTTGGGTCATGAGCAG
CCCAACCCTCTTAGAGCAAAGGATAAGGCTCGACTGCCCAGAGAGGACCC
AACCTTTGAAAGGAAGGCATGA

Coding sequence (CDS) from alignment at Ca4_v2.0:30043310..30043831-

>drCicArie.Frontier.2.0.Ca_v2.0_10586.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10586.1; Name=evm.Ca_v2.0_10586; organism=Cicer arietinum; type=CDS; length=315bp; location=Sequence derived from: Ca4_v2.0:30043310..30043831- (Cicer arietinum
ATGTCATCATCACGGAAAAATGTCGAGCCAACGGGGTCAGGTGCCAGTAG
TGACAATGGTAAAGGGGGGAGGTGGAGACTGTTGAACCGGAAGAGATTGC
TCAGGAAGAGTTTATGGGTAACAAAGCCGATAAGATCCACTTATGAATCT
TTTTTTGGATTACACCCATTATCTCAAGTTTTGGATCGAACCAATCCATT
GACAGTTCATGGGAGAAAGTTGAGTTATTTGGGTCATGAGCAGCCCAACC
CTCTTAGAGCAAAGGATAAGGCTCGACTGCCCAGAGAGGACCCAACCTTT
GAAAGGAAGGCATGA

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evm.Ca_v2.0_10586