evm.Ca_v2.0_07333

Transcript Overview
Nameevm.Ca_v2.0_07333
Unique NamedrCicArie.Frontier.2.0.Ca_v2.0_07333.2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3_v2.0chromosomeCa3_v2.0:67594973..67599066 +Cicer arietinum cv. CDC Frontier genome v2.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.Ca_v2.0_07333drCicArie.Frontier.2.0.Ca_v2.0_07333Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon1drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon1Cicer arietinumexon
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon2drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon2Cicer arietinumexon
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon3drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon3Cicer arietinumexon
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon4drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon4Cicer arietinumexon
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon5drCicArie.Frontier.2.0.Ca_v2.0_07333.2.exon5Cicer arietinumexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr5p1drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr5p1Cicer arietinumfive_prime_UTR
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr5p2drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr5p2Cicer arietinumfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2Cicer arietinumCDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2_2Cicer arietinumCDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2_3Cicer arietinumCDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2drCicArie.Frontier.2.0.cds.Ca_v2.0_07333.2_4Cicer arietinumCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr3p1drCicArie.Frontier.2.0.Ca_v2.0_07333.2.utr3p1Cicer arietinumthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_07333.2drCicArie.Frontier.2.0.Ca_v2.0_07333.2Cicer arietinumpolypeptide
drCicArie.Frontier.2.0.Ca_v2.0_07333.2drCicArie.Frontier.2.0.Ca_v2.0_07333.2-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of evm.Ca_v2.0_07333 vs. Araport11
Match: | (Symbols: NRPD6A, NRPE6A, NRPB6A | | chr5:21104679-21105796 FORWARD LENGTH=144)

HSP 1 Score: 191.43 bits (485), Expect = 3.520e-64
Identity = 93/104 (89.42%), Postives = 100/104 (96.15%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPIE EDK + +P +RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGGD
Sbjct:   41 GEPIEAEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQVGGD 144
[Close]
BLAST of evm.Ca_v2.0_07333 vs. Araport11
Match: | (Symbols: NRPB6B, NRPE6B | | chr2:1619168-1620246 REVERSE LENGTH=144)

HSP 1 Score: 187.193 bits (474), Expect = 1.688e-62
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 0 
Query:    6 EPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            +P+ETEDK + +P +RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGGD
Sbjct:   42 DPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIVEDSWKRQVGGD 144
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FJ98|RPD6A_ARATH (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.371e-63
Identity = 93/104 (89.42%), Postives = 100/104 (96.15%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPIE EDK + +P +RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGGD
Sbjct:   41 GEPIEAEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQVGGD 144
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SJ96|RPB6B_ARATH (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.617e-61
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 0 
Query:    6 EPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            +P+ETEDK + +P +RPRKTSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGGD
Sbjct:   42 DPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIVEDSWKRQVGGD 144
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|O88828|RPAB2_RAT (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.587e-42
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|P61219|RPAB2_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.587e-42
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q32PE0|RPAB2_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.180e-41
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5R592|RPAB2_PONAB (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo abelii OX=9601 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.219e-41
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|P61218|RPAB2_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo sapiens OX=9606 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.219e-41
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|P61217|RPAB2_CRIGR (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.219e-41
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0 
Query:   19 GERP-----RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 99
            GERP     R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct:   42 GERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q24320|RPAB2_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Drosophila melanogaster OX=7227 GN=Polr2F PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.364e-39
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 0 
Query:   23 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS 100
            R T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD SYEDW +DELI+ D+
Sbjct:   54 RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVDN 131
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Match: sp|P20435|RPAB2_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPO26 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.923e-39
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:   23 RKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 98
            R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct:   79 RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2XTU4|A0A1S2XTU4_CICAR (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cicer arietinum OX=3827 GN=LOC101494253 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.041e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 
Query:    1 MTGEGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            MTGEGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   38 MTGEGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 145
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2C9VT80|A0A2C9VT80_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G144400 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.548e-66
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0 
Query:    4 EGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            +GEPIETEDKED++P ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   39 QGEPIETEDKEDQEPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445F5H1|A0A445F5H1_GLYSO (DNA-directed RNA polymerases II, IV and V subunit 6A isoform C OS=Glycine soja OX=3848 GN=D0Y65_054231 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 9.806e-66
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPI+TEDKE+EQP +RPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   38 GEPIDTEDKEEEQPVKRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 141
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445F5J4|A0A445F5J4_GLYSO (DNA-directed RNA polymerases II, IV and V subunit 6A isoform B OS=Glycine soja OX=3848 GN=D0Y65_054231 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.035e-65
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPI+TEDKE+EQP +RPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   77 GEPIDTEDKEEEQPVKRPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 180
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445IRY7|A0A445IRY7_GLYSO (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Glycine soja OX=3848 GN=D0Y65_027959 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.101e-65
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPI+TEDKE+EQP ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   39 GEPIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 142
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|I1LDU5|I1LDU5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100794926 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.101e-65
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPI+TEDKE+EQP ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   39 GEPIDTEDKEEEQPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 142
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA88D7N1|A0AA88D7N1_FICCA (Uncharacterized protein OS=Ficus carica OX=3494 GN=TIFTF001_015192 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.837e-65
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEP+E EDKEDE+P ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   25 GEPVEGEDKEDEEPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 128
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D5AYN2|A0A9D5AYN2_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_032409 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.500e-65
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 
Query:    1 MTGEGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            + G GEPIETE+KED+QP ERPR+TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   38 IDGLGEPIETEEKEDDQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 145
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6A6MSY2|A0A6A6MSY2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_040201 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.668e-65
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPIETEDKE+++P ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD
Sbjct:   40 GEPIETEDKEEQEPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 143
[Close]
BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067JS04|A0A067JS04_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26150 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.849e-65
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0 
Query:    5 GEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 108
            GEPIETEDKED++P ERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD SYEDWGVDELIVEDSWKRQVGGD
Sbjct:   46 GEPIETEDKEDQEPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDQSYEDWGVDELIVEDSWKRQVGGD 149
The following BLAST results are available for this feature:
BLAST of evm.Ca_v2.0_07333 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|3.520e-6489.42Symbols: NRPD6A, NRPE6A, NRPB6A | | chr5:21104679... [more]
|1.688e-6288.35Symbols: NRPB6B, NRPE6B | | chr2:1619168-1620246 ... [more]
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BLAST of evm.Ca_v2.0_07333 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9FJ98|RPD6A_ARATH3.371e-6389.42DNA-directed RNA polymerases II, IV and V subunit ... [more]
sp|Q9SJ96|RPB6B_ARATH1.617e-6188.35DNA-directed RNA polymerases II and V subunit 6B O... [more]
sp|O88828|RPAB2_RAT8.587e-4279.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61219|RPAB2_MOUSE8.587e-4279.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|Q32PE0|RPAB2_BOVIN1.180e-4179.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|Q5R592|RPAB2_PONAB1.219e-4179.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61218|RPAB2_HUMAN1.219e-4179.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P61217|RPAB2_CRIGR1.219e-4179.07DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|Q24320|RPAB2_DROME1.364e-3975.64DNA-directed RNA polymerases I, II, and III subuni... [more]
sp|P20435|RPAB2_YEAST1.923e-3981.58DNA-directed RNA polymerases I, II, and III subuni... [more]
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BLAST of evm.Ca_v2.0_07333 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XTU4|A0A1S2XTU4_CICAR1.041e-70100.00DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|A0A2C9VT80|A0A2C9VT80_MANES4.548e-6696.19Uncharacterized protein OS=Manihot esculenta OX=39... [more]
tr|A0A445F5H1|A0A445F5H1_GLYSO9.806e-6696.15DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|A0A445F5J4|A0A445F5J4_GLYSO3.035e-6596.15DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|A0A445IRY7|A0A445IRY7_GLYSO3.101e-6597.12DNA-directed RNA polymerases II, IV and V subunit ... [more]
tr|I1LDU5|I1LDU5_SOYBN3.101e-6597.12Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0AA88D7N1|A0AA88D7N1_FICCA3.837e-6596.15Uncharacterized protein OS=Ficus carica OX=3494 GN... [more]
tr|A0A9D5AYN2|A0A9D5AYN2_PEA4.500e-6593.52Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|A0A6A6MSY2|A0A6A6MSY2_HEVBR5.668e-6596.15Uncharacterized protein OS=Hevea brasiliensis OX=3... [more]
tr|A0A067JS04|A0A067JS04_JATCU5.849e-6596.15Uncharacterized protein OS=Jatropha curcas OX=1804... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:3.90.940.10:FF:000003coord: 2..99
e-value: 4.5E-54
score: 183.7
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 9..102
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 2..99
e-value: 1.1E-48
score: 166.4
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 20..98
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 25..76
e-value: 1.8E-9
score: 48.8
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 2..99
e-value: 5.0E-53
score: 172.0
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..99
e-value: 5.3E-48
score: 155.5
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Rpo6coord: 27..82
score: 18.725954

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_07333.2 ID=drCicArie.Frontier.2.0.Ca_v2.0_07333.2; Name=evm.Ca_v2.0_07333; organism=Cicer arietinum; type=mRNA; length=327bp
ATGACTGGAGAAGGAGAACCAATTGAAACTGAGGATAAGGAAGATGAGCA
ACCAGGAGAGCGTCCTCGAAAGACATCGAAATATATGACCAAGTATGAGC
GTGCTAGGATTCTCGGTACTCGTGCTCTTCAAATCAGTATGAATGCACCT
GTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTTGAGATTGCCATGAA
GGAGCTAAGAGAGCGGAAAATCCCTTTTACCATCCGTCGCTACTTACCTG
ATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCC
TGGAAGAGGCAAGTGGGTGGTGATTGA
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protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_07333.2

>drCicArie.Frontier.2.0.Ca_v2.0_07333.2 ID=drCicArie.Frontier.2.0.Ca_v2.0_07333.2; Name=drCicArie.Frontier.2.0.Ca_v2.0_07333.2; organism=Cicer arietinum; type=polypeptide; length=108bp
MTGEGEPIETEDKEDEQPGERPRKTSKYMTKYERARILGTRALQISMNAP
VMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDS
WKRQVGGD
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mRNA from alignment at Ca3_v2.0:67594973..67599066+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCicArie.Frontier.2.0.Ca_v2.0_07333.2 ID=drCicArie.Frontier.2.0.Ca_v2.0_07333.2; Name=evm.Ca_v2.0_07333; organism=Cicer arietinum; type=mRNA; length=4094bp; location=Sequence derived from: Ca3_v2.0:67594973..67599066+ (Cicer arietinum
ATTACTCTTTACTCCATTGAAATTGAGAGGAGAAGTATATATATGGAAGT
GTGTAGGAAGGGAAAGGGTTTTCGTGCGAGTGTAAGGGTTTAGGGCGCAG
AAAAGAAGAGAGATTACCCTCctcaactcaagtcaactcaactcaactca
actcaacAACTCTCTTCATTCACCATGGCCGACGATGACTATGAGGATAT
CGACATGGGGTtctctctctctctctctctctGACACAATTAATTAGGGT
TTTCTTGTTCAATTTTGCATTTTCCAAATAATTACTCGGAAAATTCTACA
TGCTTTTTAGTTTCTCTTTAATATAATATATATCAAAGCAATTAGAGCCT
TTTCTTTCGTAGTTTGTAAATTACTATTGAAATATTTTTCATGATTTAAA
CGACGGTGATGATTCAGGTACGAGGAGGAGCCACCAGAGCCTGAGATTGA
GGTAACATCATAATTCATTAATTTTTTACCTTTCTTTTATTCATTGGAAT
TTTAATGGAATTATAATTTGGTGGGTTGGTTCATGTGAAGGAAGGTGCAG
AGGAGGAGGATCTCGAGAACAAAAATGATGACATGACTGGAGAAGGAGAA
CCAATTGAAACTGAGGATAAGGAAGATGAGCAACCAGGAGAGCGTCCTCG
AAAGACATCGAAATATATGACCAAGTATGAGCGTGCTAGGATTCTCGGTA
CTCGTGCTCTTCAAATCAGGTTTTCTACTTAATTTTGTCACCCTAAGGTT
TTGCTTATTGATTATTTGTGATGCTATGTTTGAAAATGCAAGAATCAGAG
TCAAAATATTGAGTGATTTATGAAACGAGTCTAAGTAATTATGTGGTTAT
TTAGTTTTATATCTGAATAGTACATGAATGACTAAAGGTGCTATTTGTAC
AAGCGAGTTATGTTCAGTTAATGATTACAGTTGACTAACCTAATTGTCTT
TAATTGCACTTAATTTCTAAAACCTTCTAATTGTCCTAAGAGCATCTCCA
AAGCTCTGTCCTTGATTTCGAAAAACTTCTAAGAACATGTTTTTAAGTGA
AATAAGATTTGCCATAGTAGAAACTCCGACAAACCCATTCTTACTAGGCT
GCTTGCAGAAAACTTATGTCGAAGAAAGAGAAAAAAAACGAGGGAATGGA
GTGAGAGAATATGTAAATGGTAGGATCTATTTGTGTTTTTAAAGTAGTTT
GCCATTGGAACAAATTTGGGGCAATTCTTGGATGTGGTGTAGCTGGTTAT
GGCTACTAAAAATGAGGAAAGAACCCAATTTGGGTTCCACTGCCGGAGAG
ATGCTCTAATGCTCTGTACACAGAGCTCAGAGTAAGGCAGTAAAAAAGGC
TAGATACGTTACAATTAACCAGTAAGCAATAGCATAAACTTTgtcaaaca
cccttagtttgtctgatttgtgaaacacaagggagagagatccttggtaa
gaacatctacatagtcatcagttgttggaatatgactgacaataagctct
tgttgagggattttctctgacaaaaaagatgtcaagttccaaatgcttgg
ttctgctgtgaaggattgccattatgagacaggagactgctctcaagttg
tcacactaaatttgaggagtgctgaaaggaatctgaagttctatgagcat
agactgcagcatagggtttcagcttctgtgttagccaagattctatattc
cgcctctgtgctggattagaccctcaaagtttgcttcttaaaccaagcac
catatgtagatgtgctgacatctgggtcaaatgccctgtccgcatcacag
aaATTCAGAATAGATGTTTTTTCTGCCAGGGTTGCCTTCTGTATGACTGC
GCGATGTATGACAGTGCCTTTTAGATACTAGAGTATCCTTCTAAGGAGTT
CCAAACTACAATGCCCAAACAACTTATTGATAGAGAGTAGGATTCTGCAT
TGTTAACCCAAAAGAACTGGAGGTGGTCATTTGGCCTCATGTGAGGGTGA
GGGCAAGAAAATGGCTAATAGTTGTATTCCGTGGTTGTTTTTTCTATCAC
TGAATGGTGCAGGAAGTTCTATTTATACAAGTGATTTCTGTATTTGTAAT
TGTGAGGTTTGTAACAGGATTTCAGTTATTGTTAGAAGTTGCCATAACTG
CCAACTGACCTATCTGTCAAGGCCAAGCTTCTAGAAAGACAACTCATTAC
AATAAACCAGTATGCATATGAAAAATAACAATAACTAAAAGCCCATCTGG
GATTCCCCTCATTACTAATTACTAAGGGGAGAAAGCTCTTACCAAGGCAA
TTTTAACAAAATTTACTTATTTCTTCCTTTGAAAAACTTTGTTTCAGAAC
CTTTAAAATCTAAAATCTATAACATGTTGTCTTTATTTCTGTGCAGTATG
AATGCACCTGTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTTGAGGT
AATTGAGCCGTTTTTACTCTCTTTACTACTCAATACCTTCATTCTTGTCA
TATTACTGCTTTTGATTACTCATTCTGGGTGTATCGTTGTCGAATTTCCA
AATATATGCATATGTCCTTCATTTGAGATAAAAAAAATATTTAATTTAGA
AGCTCGCTAAGTTCTACTGCTTTATTGATCTCCTTCATTAAGCTGTGTAC
CATGACGCGCATACTACAGATATTGGCCCTGTATGCTTAGATATTCAGTC
TATGGTCGACTATACAATTGCACTAATATATGCAGCCAAATTACATGTAT
AGCATAAGGCATTCCATCTTCTCATATATTCATTTTTAATTAACTGATAT
CTTTAAGATGAGAAGATCAAATTTATTCAGAAATAGGCTTATCTTTATAT
TAGGTCTAATATTTTCCTTGTATAGTTGGTATGTTCAGCTTGTAGATTGG
TTTTCCCACCATTGTCCATAGCTTGCCTTTTCTTGGCTTGGGCCCCTTAA
AAAAGTTCTAAGCTTTGAAAATTAAAACATAAACTGGATTGTTATTCAGT
TTGACAGTCACATGGTTTTTTCAATGTTCCATCGATAAAACTTAAAAAAA
AATGTAAGATAAGATTGTTGACAATACTTTGCTTAACTGATATGTTTGAT
GAAATTCTTGTCTCCGAATGTGACCACACATTAATTTATGATTTAAATAA
TATCCTAGATGAGTAGTGTACGTTGCTTTATTTAAAGAGTGATTTGTTAT
TGCTAAATGTTATTTGATTCTCAAGCTTTCGTGATTTGTAAAGAGTACAC
TTTGCACTCTATACTAGGAATTACATTAGTACGTGTTTTGTAAAATTAAT
TTCTTATAGCTTAGACTTTAGAAGTTTTTCCGTGTTTGGTTTATATGAAT
ATCCATGTTTTGTTTATTATGTGTTAGATCTGCTATGGTTTCATTTTTTT
GGTATCAGTTCTGTAATCGTAATGCTATGTATTTTATTTTTTGTAATGTC
TGATATTTTATTATCCAATCCCTTCAGATTGCCATGAAGGAGCTAAGAGA
GCGGAAAATCCCTTTTACCATCCGTCGCTACTTACCTGATGGAAGGTATA
TATAGTCAGTCTATTTTGTTAGTTGTGTACTTACTTTTTGTTGGATGGGA
GAGGTTTAGGGTGATAGCATTTCTTCATCTTTTATGTCATACTTACCATT
TTTTGCTACATTGTCCAGCTATGAAGATTGGGGAGTTGATGAACTGATTG
TGGAAGACTCCTGGAAGAGGCAAGTGGGTGGTGATTGATGATCCTACCAT
AAAAAGACAGACACTAAGATCTGTCAATTATCTTAGATTTGGGTGAAGTG
GACACTGTTCTAGGATCCTACCATGAAATTGGCTTATAGCATCCTATTAG
TTTTGGATTTCTATGTATGTCCTGTCCCTTTGTGTTTTAACTCGGTAACA
TTTTCTGTTTCTGCTAGTCTGTATATGATAAACCTCTAGGCTTTAAACAG
TATTTGCCGGTGTTTGTCAAATCAGCTTCAGGCTGCACTAGGCAATATGA
ACATTGAAGTGATACTTACCATATGGGTTTTTGAACTTTCCAGATTTTCA
AATTTCTACTTCATAATGGAAATATCATTAATACAAGAGTCTTG
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Coding sequence (CDS) from alignment at Ca3_v2.0:67594973..67599066+

>drCicArie.Frontier.2.0.Ca_v2.0_07333.2 ID=drCicArie.Frontier.2.0.Ca_v2.0_07333.2; Name=evm.Ca_v2.0_07333; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca3_v2.0:67594973..67599066+ (Cicer arietinum
ATGACTGGAGAAGGAGAACCAATTGAAACTGAGGATAAGGAAGATGAGCA
ACCAGGAGAGCGTCCTCGAAAGACATCGAAATATATGACCAAGTATGAGC
GTGCTAGGATTCTCGGTACTCGTGCTCTTCAAATCAGTATGAATGCACCT
GTCATGGTCGAGTTGGAGGGGGAAACTGACCCACTTGAGATTGCCATGAA
GGAGCTAAGAGAGCGGAAAATCCCTTTTACCATCCGTCGCTACTTACCTG
ATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATTGTGGAAGACTCC
TGGAAGAGGCAAGTGGGTGGTGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036161RPB6/omega-like_sf
IPR006110Pol_omega/Rpo6/RPB6
IPR028363RPB6
IPR006111Rpo6/Rpb6
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351DNA-templated transcription
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005665RNA polymerase II, core complex