evm.Ca_v2.0_07843
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Match: | (Symbols: GIR2 | | chr3:3667337-3667690 FORWARD LENGTH=117) HSP 1 Score: 110.923 bits (276), Expect = 9.545e-33 Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPP---RVDRRMESSPTRSASVSPPSSCVSSENDPNSPEP-TSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLK 91
MSRRN +GPKL+L+LNLSPP + SP RS + SP SSCVSSE + E TSMVLVGCPRCLMYVMLS++DPKCPKC STVLLDFL+
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP-SSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQ 94
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Match: | (Symbols: GIR1 | | chr5:1912895-1913263 FORWARD LENGTH=122) HSP 1 Score: 95.5153 bits (236), Expect = 1.283e-26 Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRV-DRRMESSPTRSASVSPPSSCVSS------ENDPN-----SPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90
MSRR+ PKL+LKLNLSPP RRM SP+RSA+ SP S S +++P+ SPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL
Sbjct: 1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFL 99
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Match: | (Symbols: GIR1 | | chr5:1912895-1913263 FORWARD LENGTH=122) HSP 1 Score: 95.5153 bits (236), Expect = 1.283e-26 Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRV-DRRMESSPTRSASVSPPSSCVSS------ENDPN-----SPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90
MSRR+ PKL+LKLNLSPP RRM SP+RSA+ SP S S +++P+ SPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL
Sbjct: 1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFL 99
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Match: | (Symbols: SIED1 | Salt-Induced and EIN3/EIL1-Dependent 1 | chr5:7372487-7372768 REVERSE LENGTH=93) HSP 1 Score: 59.6918 bits (143), Expect = 5.321e-13 Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLS-ENDPKCPKCHSTVLLDFLKLDNNNNNNKKS 102
M++ S LDLKLN+SP + S + S E SMV+VGCP C+MY++ S ENDP+CP+C+S VLLDFL N++KKS
Sbjct: 1 MNQEAASNLGLDLKLNISPSLDSSLLTESSSSSLCSEEAEG--------GGGEAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL----TGNHSKKS 91
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:5639079-5639995 FORWARD LENGTH=259) HSP 1 Score: 47.3654 bits (111), Expect = 2.385e-7 Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0 Query: 55 TSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLK 91
S V GCP CL YV +++N+PKCP+CHS V L +K
Sbjct: 213 ASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPLPAMK 249
BLAST of evm.Ca_v2.0_07843 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SRN4|GIR2_ARATH (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.174e-32 Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPP---RVDRRMESSPTRSASVSPPSSCVSSENDPNSPEP-TSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLK 91
MSRRN +GPKL+L+LNLSPP + SP RS + SP SSCVSSE + E TSMVLVGCPRCLMYVMLS++DPKCPKC STVLLDFL+
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP-SSCVSSETNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQ 94
BLAST of evm.Ca_v2.0_07843 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FNI1|GIR1_ARATH (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.235e-25 Identity = 65/102 (63.73%), Postives = 74/102 (72.55%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRV-DRRMESSPTRSASVSPPSSCVSS------ENDPN-----SPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90
MSRR+ PKL+LKLNLSPP RRM SP+RSA+ SP S S +++P+ SPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL
Sbjct: 1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFL 99
BLAST of evm.Ca_v2.0_07843 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FMS4|SIED1_ARATH (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 5.140e-12 Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLS-ENDPKCPKCHSTVLLDFLKLDNNNNNNKKS 102
M++ S LDLKLN+SP + S + S E SMV+VGCP C+MY++ S ENDP+CP+C+S VLLDFL N++KKS
Sbjct: 1 MNQEAASNLGLDLKLNISPSLDSSLLTESSSSSLCSEEAEG--------GGGEAKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL----TGNHSKKS 91
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2XTG6|A0A1S2XTG6_CICAR (Uncharacterized protein LOC101497048 OS=Cicer arietinum OX=3827 GN=LOC101497048 PE=4 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.566e-64 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKKS 102
MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKKS
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKKS 102
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4XRX2|A0A9D4XRX2_PEA (Uncharacterized protein (Fragment) OS=Pisum sativum OX=3888 GN=KIW84_031248 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.476e-48 Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVD-RRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKK 101
MSRRNG+GPKLDLKLNLSPPR + RR+ESSPTRSAS+SPPSSCVSSE+ PNSPE TSM+LVGCPRCLMYVMLSEND KCPKC STVLLDFL NNNKK
Sbjct: 36 MSRRNGTGPKLDLKLNLSPPRAEIRRIESSPTRSASLSPPSSCVSSESGPNSPEATSMLLVGCPRCLMYVMLSENDQKCPKCESTVLLDFL------NNNKK 131
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072U397|A0A072U397_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499448 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.495e-46 Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNN 97
MSRRNGSGPKLDLKLNLSPPRV+RRMESSPTRSASVSPPSSCVSSEN +SPE TSM+LVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL +NNNN
Sbjct: 14 MSRRNGSGPKLDLKLNLSPPRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNAENNNN 110
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|B7FH31|B7FH31_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0267071 PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 5.708e-46 Identity = 88/97 (90.72%), Postives = 92/97 (94.85%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNN 97
MSRRNGSGPKLDLKLNLSPPRV+RRMESSPTRSASVSPPSSCVSSEN +SPE TSM+LVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL +NNNN
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVNRRMESSPTRSASVSPPSSCVSSENGSSSPEATSMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLNAENNNN 97
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3P9F0|A0A2K3P9F0_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g008538 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.171e-43 Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVD-RRMESSPTRSASVSP---PSSCVSSE----------NDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNN 99
MSRRNGSGPKLDLKLNLSPPR D RR+ESSPTRSA+VSP PSSCVS+E NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL +NN N
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRADHRRVESSPTRSATVSPTSPPSSCVSTELNQEDGNNQQRHSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENNNKRRN 113
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A394DD83|A0A394DD83_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_31114 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.738e-43 Identity = 84/114 (73.68%), Postives = 90/114 (78.95%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVD--RRMESSPTRSASVSP---PSSCVSSENDP---------NSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNK 100
MSRRNGSGPKLDLKLNLSPPRVD R ESSPTRSA+VSP PSSCVSS+++ NSPE TSMVLVGCPRCLMYVMLSE DPKCPKC STVLLDFL +NNN N+
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVDHHRGQESSPTRSATVSPTSPPSSCVSSDDNNNNNNNNRYSNSPEATSMVLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDFLHDHDNNNENR 114
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151S1A1|A0A151S1A1_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_029734 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 3.621e-43 Identity = 81/99 (81.82%), Postives = 86/99 (86.87%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSP---PSSCVSSENDP------NSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90
MSRRNGSGPKLDLKLNLSPPRV+RR+ES PTRSA+VSP PSSCVSSE +P NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVERRLES-PTRSATVSPTSPPSSCVSSELNPEDKSYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFL 98
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3MC92|A0A2K3MC92_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g044492 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 4.569e-43 Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSPPSSCVSSENDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 90
MSRRNGSGPKLDLKLNLSPPRV+RRMESSPTRSASVSPPSSCVSSEN NSPE SM+LVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL
Sbjct: 17 MSRRNGSGPKLDLKLNLSPPRVNRRMESSPTRSASVSPPSSCVSSENGSNSPEAISMLLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFL 106
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86RQR1|A0AA86RQR1_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS2756 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 7.311e-43 Identity = 83/111 (74.77%), Postives = 89/111 (80.18%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVDRRMESSPTRSASVSP---PSSCVSSE------NDPNSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKKS 102
MSRRNGSGP+LDLKLNLSPPRVDRR+ES PTRSA+ SP PSSCVSSE N NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDFL D N ++S
Sbjct: 45 MSRRNGSGPQLDLKLNLSPPRVDRRLES-PTRSATASPTSPPSSCVSSELNQEEKNYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH-DTKNPTIRRS 153
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072VKL8|A0A072VKL8_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_1g058120 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.117e-42 Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 0 Query: 1 MSRRNGSGPKLDLKLNLSPPRVD-RRMESSPTRSASVSP---PSSCVSSENDP----------NSPEPTSMVLVGCPRCLMYVMLSENDPKCPKCHSTVLLDFLKLDNNNNNNKK 101
MSRRNGSGPKLDLKLNLSPPRVD RR+ESSPTRSA+VSP PSSCVS+E + NSPE TSMVLVGCPRCLMYVMLSE+DPKCPKC STVLLDF + NNN+K+
Sbjct: 1 MSRRNGSGPKLDLKLNLSPPRVDHRRVESSPTRSATVSPTSPPSSCVSTELNQEDGNNQQRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDF---HHENNNSKR 112 The following BLAST results are available for this feature:
BLAST of evm.Ca_v2.0_07843 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11) Total hits: 5 Position : 0 Zoom : x 1
BLAST of evm.Ca_v2.0_07843 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot ) Total hits: 3 Position : 0 Zoom : x 1
BLAST of evm.Ca_v2.0_07843 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCicArie.Frontier.2.0.Ca_v2.0_07843.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_07843.1; Name=evm.Ca_v2.0_07843; organism=Cicer arietinum; type=mRNA; length=309bpback to top protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_07843.1 >drCicArie.Frontier.2.0.Ca_v2.0_07843.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_07843.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_07843.1; organism=Cicer arietinum; type=polypeptide; length=102bpback to top mRNA from alignment at Ca3_v2.0:72242179..72242919+ Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCicArie.Frontier.2.0.Ca_v2.0_07843.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_07843.1; Name=evm.Ca_v2.0_07843; organism=Cicer arietinum; type=mRNA; length=741bp; location=Sequence derived from: Ca3_v2.0:72242179..72242919+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3_v2.0:72242179..72242919+ >drCicArie.Frontier.2.0.Ca_v2.0_07843.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_07843.1; Name=evm.Ca_v2.0_07843; organism=Cicer arietinum; type=CDS; length=309bp; location=Sequence derived from: Ca3_v2.0:72242179..72242919+ (Cicer arietinumback to top |