PvulFLAVERTChr07.585

Transcript Overview
NamePvulFLAVERTChr07.585
Unique NamedrPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Sequence length693
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:10526313..10527005 +Phaseolus vulgaris cv. Flavert genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PvulFLAVERTChr07.585drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr07.585Phaseolus vulgarisgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr07.585.0drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr07.585.0Phaseolus vulgarisfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr07.585.1drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr07.585.1Phaseolus vulgarisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr07.585.1drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr07.585.1Phaseolus vulgarisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585Phaseolus vulgarispolypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585-proteinPhaseolus vulgarispolypeptide


Homology
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BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|V4T0D4|V4T0D4_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002991mg PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.195e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNL 48
            +    L+ VV+NSS +TP  V++ ASDWD GQV HEHSKSNG+W QNL
Sbjct:   24 LAARSLVLVVNNSSLETPCWVNSSASDWDCGQVYHEHSKSNGEWCQNL 71
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A803R5T7|A0A803R5T7_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.385e-10
Identity = 29/41 (70.73%), Postives = 30/41 (73.17%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSN 41
            MVIP L  VVDN  SKT SRVDA   D +GGQVNHEHSK N
Sbjct:   19 MVIPSLFIVVDNGGSKTSSRVDARTRDRNGGQVNHEHSKPN 59
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A835K3L7|A0A835K3L7_9ROSI (Uncharacterized protein OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf06G0104600 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.482e-10
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNL 48
            MVIP L+FVV + SSK P  VD  + D D GQVNHE SKS+GKW Q+L
Sbjct:    1 MVIPRLVFVVHHCSSKAPCWVDTRSGDRDCGQVNHEDSKSDGKWCQHL 48
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8R7UYD4|A0A8R7UYD4_TRIUA (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.180e-9
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNL 48
            MVIPG++ VVD+ S+K P  VDA ASD DGGQV+ EH + N +  Q+L
Sbjct:    1 MVIPGMVPVVDDGSAKAPRWVDAGASDGDGGQVDQEHREPNRQRGQDL 48
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5A7P826|A0A5A7P826_STRAF (MiaB-like protein OS=Striga asiatica OX=4170 GN=STAS_04506 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.481e-8
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNLIQNN 52
            +++P L+  V++ S K P RV + + D D GQV+HEH K NGKW Q+L+  N
Sbjct:   41 LIVPCLVLPVNHGSPKAPCRVYSGSGDRDRGQVDHEHGKPNGKWRQDLVDKN 92
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0N7KRY8|A0A0N7KRY8_ORYSJ (Os10g0481150 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0481150 PE=4 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.404e-8
Identity = 21/48 (43.75%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNL 48
            +++P +  VVD+  ++ P R+DA A D DGG+V+HEH +++G+W Q+L
Sbjct:    1 LIVPSIGLVVDDGGAEAPRRIDARAGDRDGGEVHHEHRETDGQWRQHL 48
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A103XSE7|A0A103XSE7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_001881 PE=4 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 8.258e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNL 48
            +VIP    VV+NSS+K PS VD  +S+  GGQ++HE+SK N +WSQNL
Sbjct:   45 LVIPHFFIVVNNSSTKAPSWVDPSSSNGYGGQMHHENSKPNWQWSQNL 92
[Close]
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Match: tr|A0A484NTX0|A0A484NTX0_9ASTE (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS45453 PE=4 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.570e-7
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0 
Query:    1 MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQ 46
            MVIP + FVVD+  ++   RVDAC  D DGGQVN E  K   +WSQ
Sbjct:    1 MVIPSMTFVVDDGRAQAAGRVDACTRDGDGGQVNQEDCKPYWEWSQ 46
The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 8
Match NameE-valueIdentityDescription
tr|V4T0D4|V4T0D4_CITCL3.195e-1160.42Uncharacterized protein OS=Citrus clementina OX=85... [more]
tr|A0A803R5T7|A0A803R5T7_CANSA7.385e-1070.73Uncharacterized protein OS=Cannabis sativa OX=3483... [more]
tr|A0A835K3L7|A0A835K3L7_9ROSI9.482e-1062.50Uncharacterized protein OS=Salix dunnii OX=1413687... [more]
tr|A0A8R7UYD4|A0A8R7UYD4_TRIUA5.180e-956.25Uncharacterized protein OS=Triticum urartu OX=4572... [more]
tr|A0A5A7P826|A0A5A7P826_STRAF1.481e-846.15MiaB-like protein OS=Striga asiatica OX=4170 GN=ST... [more]
tr|A0A0N7KRY8|A0A0N7KRY8_ORYSJ7.404e-843.75Os10g0481150 protein (Fragment) OS=Oryza sativa su... [more]
tr|A0A103XSE7|A0A103XSE7_CYNCS8.258e-856.25Uncharacterized protein OS=Cynara cardunculus var.... [more]
tr|A0A484NTX0|A0A484NTX0_9ASTE1.570e-754.35Uncharacterized protein OS=Cuscuta campestris OX=1... [more]
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BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of PvulFLAVERTChr07.585 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585; Name=PvulFLAVERTChr07.585; organism=Phaseolus vulgaris; type=mRNA; length=693bp
aggtaaattatttttttttcccatAAATATATTTGAGTACAAAGATGACA
GAAGAGAATAACTTGAAAGAAAGATGACACACTAAAGGCAACACAGGAAA
GTGCAAAAGGCTCCCCCTGTCATGAAAGAGACTTTAATCTACACTTATCC
ACAATCTTGAAGACATAATTGAGAGAAACGTTGCAAACACCAAAAGCATT
TCCCATTATTAAACTTGCAATATCAACTCCATCTCTCCAATTATCTTCTT
TCCAAAAGAGCCATCATGAAGAGAAAGACAACTCAAACATGGGGGTTACT
CCTGAATGATCCAAGGGCCTTAACTGCCCCTGCTCTCAAGATGAACTGGT
GGTAGAAAGCTGCAATGGCTGCCCCAATAAATGGTCCTACCCAAAAGATC
CACTGGCCAGACACAAGGGAACAATATATCAGATAAAGCTATAgctttat
aaattatttcttagTTCACAAACTGAGTTTTGGTAAAGCAATATAGAAAA
AGTAATGACTAAAGCAATATAATATACTAACATGGTCATCCCAGGGCTTA
TCTTTGTTGTAGATAACAGCAGCTCCAAGACTCCTAGCAGGGTTGATGCC
TGTGCCAGTGACTGGGATGGTGGCCAAGTGAACCATGAACACAGCAAATC
CAATGGGAAGTGGAGCCAAAACCTAATACAGAATAATGCATAA
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protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585; organism=Phaseolus vulgaris; type=polypeptide; length=53bp
MVIPGLIFVVDNSSSKTPSRVDACASDWDGGQVNHEHSKSNGKWSQNLIQ
NNA
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mRNA from alignment at Chr07:10526313..10527005+

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585; Name=PvulFLAVERTChr07.585; organism=Phaseolus vulgaris; type=mRNA; length=693bp; location=Sequence derived from: Chr07:10526313..10527005+ (Phaseolus vulgaris
aggtaaattatttttttttcccatAAATATATTTGAGTACAAAGATGACA
GAAGAGAATAACTTGAAAGAAAGATGACACACTAAAGGCAACACAGGAAA
GTGCAAAAGGCTCCCCCTGTCATGAAAGAGACTTTAATCTACACTTATCC
ACAATCTTGAAGACATAATTGAGAGAAACGTTGCAAACACCAAAAGCATT
TCCCATTATTAAACTTGCAATATCAACTCCATCTCTCCAATTATCTTCTT
TCCAAAAGAGCCATCATGAAGAGAAAGACAACTCAAACATGGGGGTTACT
CCTGAATGATCCAAGGGCCTTAACTGCCCCTGCTCTCAAGATGAACTGGT
GGTAGAAAGCTGCAATGGCTGCCCCAATAAATGGTCCTACCCAAAAGATC
CACTGGCCAGACACAAGGGAACAATATATCAGATAAAGCTATAgctttat
aaattatttcttagTTCACAAACTGAGTTTTGGTAAAGCAATATAGAAAA
AGTAATGACTAAAGCAATATAATATACTAACATGGTCATCCCAGGGCTTA
TCTTTGTTGTAGATAACAGCAGCTCCAAGACTCCTAGCAGGGTTGATGCC
TGTGCCAGTGACTGGGATGGTGGCCAAGTGAACCATGAACACAGCAAATC
CAATGGGAAGTGGAGCCAAAACCTAATACAGAATAATGCATAA
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Coding sequence (CDS) from alignment at Chr07:10526313..10527005+

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.585; Name=PvulFLAVERTChr07.585; organism=Phaseolus vulgaris; type=CDS; length=162bp; location=Sequence derived from: Chr07:10526313..10527005+ (Phaseolus vulgaris
ATGGTCATCCCAGGGCTTATCTTTGTTGTAGATAACAGCAGCTCCAAGAC
TCCTAGCAGGGTTGATGCCTGTGCCAGTGACTGGGATGGTGGCCAAGTGA
ACCATGAACACAGCAAATCCAATGGGAAGTGGAGCCAAAACCTAATACAG
AATAATGCATAA
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