PvulFLAVERTChr07.1251

Transcript Overview
NamePvulFLAVERTChr07.1251
Unique NamedrPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Sequence length804
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:51731116..51731919 +Phaseolus vulgaris cv. Flavert genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PvulFLAVERTChr07.1251drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr07.1251Phaseolus vulgarisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr07.1251.1drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr07.1251.1Phaseolus vulgarisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr07.1251.1drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr07.1251.1Phaseolus vulgarisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251Phaseolus vulgarispolypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251-proteinPhaseolus vulgarispolypeptide


Homology
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GG47|A0A445GG47_GLYSO (Transposon TX1 149 kDa protein OS=Glycine soja OX=3848 GN=D0Y65_043130 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 5.232e-67
Identity = 117/254 (46.06%), Postives = 164/254 (64.57%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSL 256
            FNF FIK  W E+K + LR +  F  +  +P+G N+SFI+LIPK+ +P H++DFRPIS +G +YKI+AK+L+ RL KVL+ ++D RQ AF++G  L+ GVL+AN+V+EE +R K  C+ FKVD+EKAYD + W F++YM+ R+GF   A L                     V+  +  +QRNFLWG    G+KIAWV+W +VC   E  GLG+ DI+ FN  L+ KW W +   +  LW  +L SKYRGW+ L
Sbjct:  320 FNFRFIKHLWNELKLEFLRFLAEFHMNAAFPKGLNSSFIALIPKLKDPRHISDFRPISLIGCVYKIIAKVLSNRLSKVLNHLVDERQSAFVKGRQLLHGVLIANEVVEEARRLKKLCLVFKVDFEKAYDFVSWQFLFYMMRRMGFHDRAPL--------------------AVINKLTTIQRNFLWGGNQEGKKIAWVAWSQVCAASERGGLGVKDIKAFNKALIIKWKWLMFQNQ--LWNRILTSKYRGWRGL 551
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445HAG9|A0A445HAG9_GLYSO (Transposon TX1 149 kDa protein OS=Glycine soja OX=3848 GN=D0Y65_035524 PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.206e-64
Identity = 130/321 (40.50%), Postives = 176/321 (54.83%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG---HACLIKSVLSTL----------------------PLFY-------------------------------MSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSLWDQRKGGFDSL 267
             NF FIK  W+ +K DILR +  F  +G +P+G N SFI+LIPKV +   L+D RPIS +G +YKI++K+L  RLK V+  +IDGRQ AF+EG  L+ GVLVAN+V+EE KR++  C+ FKVDYEKAYDS+ W+F++YM+ R+GFC      CL  + +  L                      P  +                               +S+ ++   VV  +V +QR FLWG G    KIAWV W+ VC P+++ GLG+ DI  FN  LL KW W L +    L   VLESKY GW+ L +       SL
Sbjct:   46 LNFKFIKKFWQTLKPDILRFLDEFYVNGIFPKGCNASFIALIPKVSDLQGLSDHRPISLIGCIYKIVSKLLAKRLKMVMPSIIDGRQSAFIEGRHLLHGVLVANEVVEEAKRKQMPCLVFKVDYEKAYDSVSWNFLFYMMRRMGFCPRWIEGCLSSASVLILVNGSPSAEFTPQRGLRLGDPLVPFLFNIVAEGLSGLVREAIDKKLYIGFAVGRDKVDVSILQVPRRVVDKLVCIQRRFLWGGGVDQHKIAWVKWETVCLPKDKGGLGIKDINNFNLALLTKWKWNLFNHGGELRTRVLESKYGGWRGLDEASNDSHASL 366
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6NQA1|A0A2Z6NQA1_TRISU (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_146130 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.329e-56
Identity = 107/290 (36.90%), Postives = 159/290 (54.83%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG------HACLIKSVLSTL----------------------PLFYM-------SMF-------KMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
            FN  F    W  +K D++  +  F E    P+    SF++LIPK D+P  L D+RPI  +G LYKI++KIL  RLKKVL K+I   Q AFL    ++D VLV N+V++  KRRK +C+ FKVD+E+AYD++ W F+  M+ ++GF         AC+ +S +S L                      P  ++       SM        +    V+K + K+QRNFLWG G+  RKI WV W ++C P+ + GLG+ ++  FN  LL KW+WR  + +  +W ++L  +Y
Sbjct:   80 FNLHFFNVCWPIVKKDLMNFLAEFHEKATLPKVVTASFLTLIPKKDHPQDLFDYRPICLIGSLYKILSKILANRLKKVLGKLISSCQSAFLSQRQILDRVLVLNEVIDLAKRRKDNCLLFKVDFERAYDTVSWGFLERMMSKMGFSEGWLKWMRACIFESSMSILVNGSPTEDFKVGRGLRQGDPLSPFLFLIVAEGLASMMNKAVDVGRAPCCVLKSIEKIQRNFLWGGGAEERKICWVKWDQICLPKVKGGLGVKNLELFNLALLSKWMWRFSNHDNAIWVDLLRYRY 369
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445JN14|A0A445JN14_GLYSO (Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Glycine soja OX=3848 GN=D0Y65_022321 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.322e-56
Identity = 123/308 (39.94%), Postives = 165/308 (53.57%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDS-------------------------------------IIWDFVYYMLERL----------GFCGHACLIK-SVL--STLPLFYMSMFKMSAMVVKDV----VKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSL 256
             NF FIK  W  +K D+LR +  F  +G +PRG N SFI LIPKV NP  L ++RPI  +G +YKI+AK+L  RLKK++  +ID RQ AF+EG  L+  VL+A++V++E KR K  C+ FKVDYEKAYDS                                      +++ V   L  L          GF   A +++ S+L  +   +F+    + +  + K V    V LQR FLWG G    KIAW+ W  VC P+E+ GLG+ DI  FN  LLGKW W L   +  LW  VL+SKY GW+ L
Sbjct:  102 INFKFIKRFWNLVKPDVLRFMEEFYVNGIFPRGCNASFIVLIPKVVNPQSLEEYRPILLIGCMYKIVAKLLANRLKKIIPFIIDERQTAFIEGRHLLHSVLIASEVVDEAKRSKKPCLVFKVDYEKAYDSWIVGCLKSASVSILVNDSPSTEFSPQRGLRQGDPLAPFLFNIVAKALNGLVREAIKRNYRGFSVGANIVEVSILQYADDTIFFGEASQENVRIPKKVEEKLVSLQRKFLWGEGPDKNKIAWIKWNIVCLPKEKGGLGLKDINTFNLALLGKWRWNLFQHDGQLWARVLKSKYGGWRGL 409
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SF42|A0A151SF42_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_024560 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.048e-56
Identity = 95/165 (57.58%), Postives = 121/165 (73.33%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG------HACLIKSVLSTL 161
            FNF FIK  WE +K DI+R++  F  +G+ P+G+N++FI+LIPKVD+P  L D+RPIS VG LYKI+AKIL  RLKKVL  VID RQ AFLEG  L+  V++AN+ L+EVK+ K SC+FFKVDYEKAYDS+ W+F+ YML RLGF         ACL  + +S L
Sbjct:  152 FNFKFIKSFWETVKEDIVRMMKEFHANGKLPKGTNSTFITLIPKVDDPQSLGDYRPISLVGCLYKILAKILANRLKKVLPSVIDDRQSAFLEGRNLLQSVVIANETLDEVKKEKKSCIFFKVDYEKAYDSVNWEFLLYMLRRLGFDPKWIQWIRACLESAHVSVL 316
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SR09|A0A151SR09_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_003520 PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.486e-55
Identity = 95/165 (57.58%), Postives = 120/165 (72.73%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG------HACLIKSVLSTL 161
            FNF FIK  WE +K DI+R++  F  +G+ P+G+N++FI+LIPKVD+P  L D+RPIS VG LYKI+AKIL  RLKKVL  VID RQ AFLEG  L+  V++AN+ L+EVK+ K SC FFKVDYEKAYDS+ W+F+ YML RLGF         ACL  + +S L
Sbjct:   17 FNFKFIKSFWETVKEDIVRMMKEFHANGKLPKGTNSTFITLIPKVDDPQTLGDYRPISLVGCLYKILAKILANRLKKVLPSVIDDRQSAFLEGTNLLQSVVIANETLDEVKKEKKSCTFFKVDYEKAYDSVNWEFLLYMLRRLGFDTKWIQWIRACLESAHVSVL 181
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SM79|A0A151SM79_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_002163 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.575e-54
Identity = 95/165 (57.58%), Postives = 122/165 (73.94%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG------HACLIKSVLSTL 161
            FNF FIK  WE +KGDI+R+V  F  +G+ P+G+N++FI+LIPKVD+P  L+D+RPIS VG LYKI+AKIL  RLKKVL  +ID RQ AFLEG  L+  V++AN+ L EVK+ K S +FFKVDYEKAYDS+ W+F+ YML+RLGF G        CL  + +S L
Sbjct:  182 FNFKFIKPFWETLKGDIVRMVKEFHANGKLPKGTNSTFITLIPKVDDPQSLDDYRPISLVGCLYKILAKILANRLKKVLPSIIDDRQSAFLEGRNLLQSVVIANETLYEVKKEKKSYIFFKVDYEKAYDSVNWEFLLYMLKRLGFEGKWIQWIQVCLESAHVSVL 346
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6NAR9|A0A2Z6NAR9_TRISU (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_299740 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.645e-53
Identity = 101/280 (36.07%), Postives = 156/280 (55.71%), Query Frame = 0 
Query:    4 NFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCGH------ACLIKS---------------------------VLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
            NFGFIK  W ++K D +R +  F  + R  +GSN +FI  IPKV NP  ++DFR IS VG +YK++A +L  RLK V+ KVI   Q  F++G  ++DG+L+AN+ +++ K+RK   + FKVD+EKAYDS+ W ++  ++ ++GF          C+  +                           ++   P  ++   + S   + D  ++  +FLWG     RKI W+ W ++C  +EE GLG+  ++ FN  LLGKW WRL  + +GLW  VL +KY
Sbjct:   76 NFGFIKEFWMDVKNDFMRFLLEFYSNNRLVKGSNCTFIVFIPKVANPKKMSDFRHISLVGCMYKVLANVLANRLKSVIDKVILDTQSTFVKGRQILDGILIANEAVDDAKKRKKELLLFKVDFEKAYDSVDWKYLESVMGKMGFSDKWRRWIMTCVSSATASGYQVGSEATSSVHLSHLQFADDTLIMGQFPKKFVGEGEFSDSWLADAARVLNSFLWGGSEESRKINWLKWDRICLRKEEGGLGVRRVKEFNLALLGKWCWRLLQDTEGLWFRVLAAKY 355
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TI35|A0A151TI35_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_013028 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.528e-53
Identity = 90/145 (62.07%), Postives = 114/145 (78.62%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGF 147
            FNF FIK  WE +K DI+R++  F  +G+ P+G+N++FI+LIPKVD+P  L D+RPIS VG LYKI+AKIL  RLKKVL  VID RQ AFLEG  L+  V++AN+ L+EVK+ K SC+FFKVDYEKAYDS+ W+F+ YML RLGF
Sbjct:  375 FNFKFIKSFWETVKEDIVRMMKEFHANGKLPKGTNSTFITLIPKVDDPQSLGDYRPISLVGCLYKILAKILANRLKKVLPSVIDDRQSAFLEGRNLLQSVVIANETLDEVKKEKKSCIFFKVDYEKAYDSVNWEFLLYMLRRLGF 519
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151QR03|A0A151QR03_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_046538 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.382e-51
Identity = 95/165 (57.58%), Postives = 121/165 (73.33%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG------HACLIKSVLSTL 161
            FNF FIK  WE +K DI+R++  F  +G+ P+G+N++FI+LIPKVD+P  L D+RPIS VG LYKI+AKIL  RLKKVL  VID RQ AFLEG  L+  V++AN+ L+EVK+ K SC+FFKVDYEKAYDS+ W+F+ YML RLGF         ACL  + +S L
Sbjct:  347 FNFKFIKSFWETVKEDIVRMMKEFHANGKLPKGTNSTFITLIPKVDDPQSLGDYRPISLVGCLYKILAKILANRLKKVLPSVIDDRQSAFLEGRNLLQSVVIANETLDEVKKEKKSCIFFKVDYEKAYDSVNWEFLLYMLRRLGFDPKWIQWIRACLESAHVSVL 511

HSP 2 Score: 119.783 bits (299), Expect = 1.099e-26
Identity = 57/106 (53.77%), Postives = 68/106 (64.15%), Query Frame = 0 
Query:  145 LGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
            L   G  CLI SVL++LPLFY S F+    VVK +V +QR FLWG+    RKIAWV W+KV RP+EE GLG+ +I  FN  LL KW W L H    +W  VL SKY
Sbjct:  676 LSMAGRVCLINSVLTSLPLFYFSFFRAPKTVVKQIVSIQRKFLWGYSEDIRKIAWVRWEKVTRPKEEGGLGIKNIATFNVALLAKWRWNLFHNPDSMWARVLLSKY 781
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|P0C2F6|RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.606e-15
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 0 
Query:  145 LGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
            L F G   L K+VLS++P+  MS   +   ++  + +L R FLWG  +  +K   V W KVC P++E GLG+   +  N  L+ K  WRL  E+  LW  VL+ KY
Sbjct:   32 LSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 137
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|P14381|YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.467e-13
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 0 
Query:    7 FIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGF 147
            F +F W+ +  D  RV+    + G  P     + +SL+PK  +   + ++RP+S +   YKI+AK +++RLK VL +VI   Q   + G  + D V +   +L   +R   S  F  +D EKA+D +   ++   L+   F
Sbjct:  476 FFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSF 616
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|P93295|M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.392e-12
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 0 
Query:  160 TLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEK-GLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
             LP++ MS F++S ++ K +      F W      RKI+WV+W+K+C+ +E+  GLG  D+  FN  LL K  +R+ H+   L   +L S+Y
Sbjct:    2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRY 93
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|P08548|LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.939e-9
Identity = 41/139 (29.50%), Postives = 75/139 (53.96%), Query Frame = 0 
Query:   13 EEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKV-DNPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRKSS-CVFFKVDYEKAYDSIIWDFVYYMLERLGFCG 149
            EE+   +L +  N E++G  P     + I+LIPK   +P    ++RPIS +    KI+ KILT R+++ + K+I   Q  F+ G+     +  +  V++ + + K+   +   +D EKA+D+I   F+   L+++G  G
Sbjct:  485 EELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEG 623
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|P11369|LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.744e-8
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 0 
Query:    6 GFIKFRWEEIKGDIL----RVVHNFEEDGRWPRGSNTSFISLIPKVD-NPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEV----KRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG-HACLIKSVLS 159
            GF    ++  K D++    ++ H  E +G  P     + I+LIPK   +P  + +FRPIS +    KI+ KIL  R+++ +  +I   Q  F+ G   M G     K +  +    K +  + +   +D EKA+D I   F+  +LER G  G +  +IK++ S
Sbjct:  482 GFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPG---MQGWFNIRKSINVIHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYS 642
[Close]
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Match: sp|O00370|LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.590e-7
Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 0 
Query:    3 FNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVD-NPLHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMDGVLVANKVLEEVKRRK-SSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCG 149
            F   F +   EE+   +L++  + E++G  P     + I LIPK   +     +FRPIS +    KI+ KIL  R+++ + K+I   Q  F+ G      +  +  V++ + R K  + V   +D EKA+D I   F+   L +LG  G
Sbjct:  476 FTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDG 624
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8793208 FORWARD LENGTH=828)

HSP 1 Score: 69.3218 bits (168), Expect = 4.344e-13
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 0 
Query:  144 RLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSLWDQRKGGF 264
             L F G   LI SV+ +L  F+MS F++ +  +K++  +  +FLW       K A V+W  VC P++E GLG+  ++  N   L K IWR+      LW +        W  L+  RKG F
Sbjct:  114 HLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQ--------WLRLYLLRKGSF 225
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8790907 FORWARD LENGTH=532)

HSP 1 Score: 67.0106 bits (162), Expect = 2.181e-12
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 0 
Query:  140 YMLERLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSLWDQRKGGFDSL 267
            +    L F G   LI SV+ +L  F+MS F++ +  +K++  +  +FLW       K A V+W  VC P++E GLG+  ++  N   L K IWR+      LW +        W  L+  RKG F S+
Sbjct:  110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQ--------WLRLYLLRKGSFWSI 228
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8790907 FORWARD LENGTH=532)

HSP 1 Score: 67.0106 bits (162), Expect = 2.181e-12
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 0 
Query:  140 YMLERLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSLWDQRKGGFDSL 267
            +    L F G   LI SV+ +L  F+MS F++ +  +K++  +  +FLW       K A V+W  VC P++E GLG+  ++  N   L K IWR+      LW +        W  L+  RKG F S+
Sbjct:  110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQ--------WLRLYLLRKGSFWSI 228
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789471-8790907 FORWARD LENGTH=478)

HSP 1 Score: 67.0106 bits (162), Expect = 2.367e-12
Identity = 45/143 (31.47%), Postives = 68/143 (47.55%), Query Frame = 0 
Query:  125 DYEKAYDSIIWDFVYYMLERLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKYRGWQSLWDQRKGGFDSL 267
            DY    + I      +    L F G   LI SV+ +L  F+MS F++ +  +K++  +  +FLW       K A V+W  VC P++E GLG+  ++  N   L K IWR+      LW +        W  L+  RKG F S+
Sbjct:   41 DYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQ--------WLRLYLLRKGSFWSI 174
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789471-8793208 FORWARD LENGTH=746)

HSP 1 Score: 66.6254 bits (161), Expect = 3.433e-12
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 0 
Query:  144 RLGFCGHACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFN---------TTLLGKWIWR 233
             L F G   LI SV+ +L  F+MS F++ +  +K++  +  +FLW       K A V+W  VC P++E GLG+  ++  N          T LG W+W+
Sbjct:   60 HLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWK 158
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:14333528-14335255 FORWARD LENGTH=575)

HSP 1 Score: 54.299 bits (129), Expect = 4.199e-8
Identity = 27/91 (29.67%), Postives = 46/91 (50.55%), Query Frame = 0 
Query:  160 TLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWVSWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY 250
             LP + M+ F +   V K ++ +  +F W      + + W +W  +   + E G+G  DI  FN  LLGK +WR+    + L  +V +S+Y
Sbjct:    2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRY 92
The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr07.1251 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A445GG47|A0A445GG47_GLYSO5.232e-6746.06Transposon TX1 149 kDa protein OS=Glycine soja OX=... [more]
tr|A0A445HAG9|A0A445HAG9_GLYSO1.206e-6440.50Transposon TX1 149 kDa protein OS=Glycine soja OX=... [more]
tr|A0A2Z6NQA1|A0A2Z6NQA1_TRISU2.329e-5636.90Reverse transcriptase domain-containing protein OS... [more]
tr|A0A445JN14|A0A445JN14_GLYSO7.322e-5639.94Imidazole glycerol phosphate synthase hisHF, chlor... [more]
tr|A0A151SF42|A0A151SF42_CAJCA9.048e-5657.58Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
tr|A0A151SR09|A0A151SR09_CAJCA4.486e-5557.58Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
tr|A0A151SM79|A0A151SM79_CAJCA4.575e-5457.58Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
tr|A0A2Z6NAR9|A0A2Z6NAR9_TRISU1.645e-5336.07Reverse transcriptase domain-containing protein OS... [more]
tr|A0A151TI35|A0A151TI35_CAJCA4.528e-5362.07Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
tr|A0A151QR03|A0A151QR03_CAJCA1.382e-5157.58Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
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BLAST of PvulFLAVERTChr07.1251 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
sp|P0C2F6|RNHX1_ARATH2.606e-1538.68Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
sp|P14381|YTX2_XENLA1.467e-1329.79Transposon TX1 uncharacterized 149 kDa protein OS=... [more]
sp|P93295|M310_ARATH2.392e-1235.87Uncharacterized mitochondrial protein AtMg00310 OS... [more]
sp|P08548|LIN1_NYCCO3.939e-929.50LINE-1 reverse transcriptase homolog OS=Nycticebus... [more]
sp|P11369|LORF2_MOUSE1.744e-829.27LINE-1 retrotransposable element ORF2 protein OS=M... [more]
sp|O00370|LORF2_HUMAN1.590e-729.53LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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BLAST of PvulFLAVERTChr07.1251 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 6
Match NameE-valueIdentityDescription
|4.344e-1333.88Symbols: no symbol available | no full name availa... [more]
|2.181e-1232.81Symbols: no symbol available | no full name availa... [more]
|2.181e-1232.81Symbols: no symbol available | no full name availa... [more]
|2.367e-1231.47Symbols: no symbol available | no full name availa... [more]
|3.433e-1233.33Symbols: no symbol available | no full name availa... [more]
|4.199e-829.67Symbols: no symbol available | no full name availa... [more]
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InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 44..158
e-value: 1.5E-11
score: 55.9
IPR052343Diverse Retrotransposon and Effector-Associated ProteinPANTHERPTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDcoord: 151..201
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 38..169
e-value: 1.96862E-29
score: 108.918
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 28..149

Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 44..158
e-value: 1.5E-11
score: 55.9
IPR052343Diverse Retrotransposon and Effector-Associated ProteinPANTHERPTHR46890NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATEDcoord: 151..201
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 38..169
e-value: 1.96862E-29
score: 108.918
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 28..149

Sequences
The following sequences are available for this feature:

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251; Name=PvulFLAVERTChr07.1251; organism=Phaseolus vulgaris; type=mRNA; length=804bp
atgatttttaattttggcTTTATAAAGTTTCGCTGGGAAGAGATTAAGGG
AGACATACTTAGAGTTGTTCATAATTTTGAGGAGGATGGAAGATGGCCAA
GGGGGTCAAACACTTCGTTTATTTCTTTGATTCCTAAAGTTGACAATCCA
CTACATCTGAATGATTTTAGACCTATTTCTTTTGTTGGTCGTCTGTATAA
GATTATGGCAAAAATCTTGACTATGAGGTTGAAGAAAGTGCTACACAAGG
TCATCGACGGAAGGCAATTTGCATTCCTGGAGGGCAATGGGCTTATGGAT
GGTGTTTTAGTGGCTAACAAGGTCTTGGAAGAGGTAAAGAGGAGGAAAAG
TAGTTGTGTTTTCTTCAAGGTTGATTATGAAAAAGCTTATGATTCAATCA
TTTGGGATTTTGTGTACTACATGCTGGAAAGGTTAGGTTTCTGTGGGCAT
GCTTGTCTGATTAAATCAGTGTTATCCACTCTCCCCTTATTCTATATGTC
TATGTTTAAAATGTCGGCAATGGTGGTGAAGGATGTAGTGAAGTTGCAAA
GAAATTTCTTGTGGGGATGGGGTTCGGGAGGTAGGAAAATTGCTTGGGTC
TCGTGGAAAAAGGTGTGTCGACCAAGGGAAGAAAAGGGGTTAGGAATGTT
AGACATTCGGCGGTTTAACACAACTCTGTTAGGAAAGTGGATTTGGCGTT
TAGGGCATGAAGAGAAGGGCTTGTGGAAAGAAGTGCTAGAATCTAAGTAT
AGAGGGTGGCAGAGTCTTTGGGATCAAAGAAAAGGTGGATTCGATTCTCT
TTGA
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protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251; organism=Phaseolus vulgaris; type=polypeptide; length=267bp
MIFNFGFIKFRWEEIKGDILRVVHNFEEDGRWPRGSNTSFISLIPKVDNP
LHLNDFRPISFVGRLYKIMAKILTMRLKKVLHKVIDGRQFAFLEGNGLMD
GVLVANKVLEEVKRRKSSCVFFKVDYEKAYDSIIWDFVYYMLERLGFCGH
ACLIKSVLSTLPLFYMSMFKMSAMVVKDVVKLQRNFLWGWGSGGRKIAWV
SWKKVCRPREEKGLGMLDIRRFNTTLLGKWIWRLGHEEKGLWKEVLESKY
RGWQSLWDQRKGGFDSL
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mRNA from alignment at Chr07:51731116..51731919+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251; Name=PvulFLAVERTChr07.1251; organism=Phaseolus vulgaris; type=mRNA; length=804bp; location=Sequence derived from: Chr07:51731116..51731919+ (Phaseolus vulgaris
atgatttttaattttggcTTTATAAAGTTTCGCTGGGAAGAGATTAAGGG
AGACATACTTAGAGTTGTTCATAATTTTGAGGAGGATGGAAGATGGCCAA
GGGGGTCAAACACTTCGTTTATTTCTTTGATTCCTAAAGTTGACAATCCA
CTACATCTGAATGATTTTAGACCTATTTCTTTTGTTGGTCGTCTGTATAA
GATTATGGCAAAAATCTTGACTATGAGGTTGAAGAAAGTGCTACACAAGG
TCATCGACGGAAGGCAATTTGCATTCCTGGAGGGCAATGGGCTTATGGAT
GGTGTTTTAGTGGCTAACAAGGTCTTGGAAGAGGTAAAGAGGAGGAAAAG
TAGTTGTGTTTTCTTCAAGGTTGATTATGAAAAAGCTTATGATTCAATCA
TTTGGGATTTTGTGTACTACATGCTGGAAAGGTTAGGTTTCTGTGGGCAT
GCTTGTCTGATTAAATCAGTGTTATCCACTCTCCCCTTATTCTATATGTC
TATGTTTAAAATGTCGGCAATGGTGGTGAAGGATGTAGTGAAGTTGCAAA
GAAATTTCTTGTGGGGATGGGGTTCGGGAGGTAGGAAAATTGCTTGGGTC
TCGTGGAAAAAGGTGTGTCGACCAAGGGAAGAAAAGGGGTTAGGAATGTT
AGACATTCGGCGGTTTAACACAACTCTGTTAGGAAAGTGGATTTGGCGTT
TAGGGCATGAAGAGAAGGGCTTGTGGAAAGAAGTGCTAGAATCTAAGTAT
AGAGGGTGGCAGAGTCTTTGGGATCAAAGAAAAGGTGGATTCGATTCTCT
TTGA
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Coding sequence (CDS) from alignment at Chr07:51731116..51731919+

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr07.1251; Name=PvulFLAVERTChr07.1251; organism=Phaseolus vulgaris; type=CDS; length=804bp; location=Sequence derived from: Chr07:51731116..51731919+ (Phaseolus vulgaris
atgatttttaattttggcTTTATAAAGTTTCGCTGGGAAGAGATTAAGGG
AGACATACTTAGAGTTGTTCATAATTTTGAGGAGGATGGAAGATGGCCAA
GGGGGTCAAACACTTCGTTTATTTCTTTGATTCCTAAAGTTGACAATCCA
CTACATCTGAATGATTTTAGACCTATTTCTTTTGTTGGTCGTCTGTATAA
GATTATGGCAAAAATCTTGACTATGAGGTTGAAGAAAGTGCTACACAAGG
TCATCGACGGAAGGCAATTTGCATTCCTGGAGGGCAATGGGCTTATGGAT
GGTGTTTTAGTGGCTAACAAGGTCTTGGAAGAGGTAAAGAGGAGGAAAAG
TAGTTGTGTTTTCTTCAAGGTTGATTATGAAAAAGCTTATGATTCAATCA
TTTGGGATTTTGTGTACTACATGCTGGAAAGGTTAGGTTTCTGTGGGCAT
GCTTGTCTGATTAAATCAGTGTTATCCACTCTCCCCTTATTCTATATGTC
TATGTTTAAAATGTCGGCAATGGTGGTGAAGGATGTAGTGAAGTTGCAAA
GAAATTTCTTGTGGGGATGGGGTTCGGGAGGTAGGAAAATTGCTTGGGTC
TCGTGGAAAAAGGTGTGTCGACCAAGGGAAGAAAAGGGGTTAGGAATGTT
AGACATTCGGCGGTTTAACACAACTCTGTTAGGAAAGTGGATTTGGCGTT
TAGGGCATGAAGAGAAGGGCTTGTGGAAAGAAGTGCTAGAATCTAAGTAT
AGAGGGTGGCAGAGTCTTTGGGATCAAAGAAAAGGTGGATTCGATTCTCT
TTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR052343Retrotransposon-Effector_Assoc
IPR043502DNA/RNA_pol_sf