Vigun11g008800.1

Transcript Overview
NameVigun11g008800.1
Unique NamedrVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11chromosomeVu11:1018652..1019650 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g008800drVigUngu.IT97K.1.2.Vigun11g008800.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.4drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.4Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.3drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.3Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.2drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.2Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.exon.1Vigna unguiculataexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.4drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.4Vigna unguiculataCDS
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.3drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.3Vigna unguiculataCDS
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.2drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.2Vigna unguiculataCDS
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.CDS.1Vigna unguiculataCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
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BLAST of Vigun11g008800.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LC23|A0A4D6LC23_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g385 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.617e-27
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 0 
Query:    1 MSSYSQNCCRRTLFSETVRRDARN----------AAVNQMNDSISFTAKTLRYHQRQENMATSSVNLV 58
            MSSYSQNCCRR L S+TVRRD RN          AAVNQMNDSISFTAKTLRYHQRQENM TSSVNLV
Sbjct:    1 MSSYSQNCCRRKLLSDTVRRDPRNVISMHKKSRYAAVNQMNDSISFTAKTLRYHQRQENMTTSSVNLV 68
[Close]
BLAST of Vigun11g008800.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LF93|A0A4D6LF93_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g1761 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.294e-18
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 
Query:   30 MNDSISFTAKTLRYHQRQENMATSSVNLVDVSKAGGGKLA 69
            MNDSISFTAK LRYHQRQENM+TSSVNLVDVSKAGGGKL 
Sbjct:    1 MNDSISFTAKILRYHQRQENMSTSSVNLVDVSKAGGGKLV 40
The following BLAST results are available for this feature:
BLAST of Vigun11g008800.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
tr|A0A4D6LC23|A0A4D6LC23_VIGUN4.617e-2777.94Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6LF93|A0A4D6LF93_VIGUN2.294e-1892.50Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
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BLAST of Vigun11g008800.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun11g008800.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2; Name=Vigun11g008800.1; organism=Vigna unguiculata; type=mRNA; length=237bp
ATGTCATCGTATTCTCAAAATTGCTGCCGCCGGACGTTATTTTCTGAGAC
CGTAAGAAGAGATGCAAGAAATGCTGCTGTAAATCAAATGAACGACTCCA
TCTCTTTCACAGCAAAAACATTACGGTACCATCAGAGGCAGGAAAATATG
GCGACAAGTTCGGTGAACTTGGTGGATGTTAGTAAAGCTGGTGGTGGGAA
GCTTGCATGGAATTCAAGTCAAAAGCCAATAGAGTGA
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protein sequence of drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2

>drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=79bp
MSSYSQNCCRRTLFSETVRRDARNAAVNQMNDSISFTAKTLRYHQRQENM
ATSSVNLVDVSKAGGGKLAWNSSQKPIE*
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mRNA from alignment at Vu11:1018652..1019650-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2; Name=Vigun11g008800.1; organism=Vigna unguiculata; type=mRNA; length=999bp; location=Sequence derived from: Vu11:1018652..1019650- (Vigna unguiculata
TCCACTCGTCTTTCTTTCCTTTCTATATGTCATCGTATTCTCAAAATTGC
TGCCGCCGGACGTTATTTTCTGAGACCGTAAGTTTTAGGGTTTCATAGGA
TAGGTTTTCACAATTTAGGTTAAATTTATTTCTTAGTAGGTGGTTAGCTA
TATATATCTGTTTGAAAAATCTGGTTTATGGTTTATGTACTTGTAATGCA
TATTTGAATATATTTTTACATATTACAGCTATTTATGAATTTTCTTTTTC
ATTTCCCGGTAAGTGTTTATATTCACGTTTCAAGATATATATCTAATTAC
ACTAATAAAACACTTTGTTTATTCATATGATAAAAGAAAGTAAAATAGTT
TATCTATCTCAGAAATGTAATACTTAAATTATTTAGACTTTATACAACAA
GAAACTGTGTGACAGAGAGATGTTATTCACAAATAATATTTTCTATTATT
TCATCTTCTAAACCATTTGATTTTGCAAACAGGTAAGAAGAGATGCAAGA
AATGCTGCTGTAAATCAAATGAACGACTCCATCTCTTTCACAGCAAAAAC
ATTACGGTACCATCAGGTTAGCATATAAAAACTACTGCAACACATAAATG
TTGTGTTTCTCTGCATTCATTTGACACTGCTATGTTATTATTATTTTCAG
AGGCAGGAAAATATGGCGACAAGTTCGGTGAACTTGGTGGATGTTAGTAA
AGCTGGTGGTGGGTGAGTATCTTTGTTTCTTATTGCAAACATCAGCATTC
ATATATTCATCTTTGTTTCTAATACTAATGCTAATTACTTCTCTATTTTC
ATTTTTTCAGGAAGCTTGCATGGAATTCAAGTCAAAAGCCAATAGAGTGA
TTATGTATTTTTATGTATTCTTTTTGTTTTCTGTTTCATTTCAACATGTA
ATCAGATCATTTTATCACCTTTATTATATTTTCAGTGTGTCTTTTCTTTA
ATCTCAAGATTTATTATTATGTTCAATGTTAATAATGATATTTCCTTTC
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Coding sequence (CDS) from alignment at Vu11:1018652..1019650-

>drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun11g008800.1.v1.2; Name=Vigun11g008800.1; organism=Vigna unguiculata; type=CDS; length=237bp; location=Sequence derived from: Vu11:1018652..1019650- (Vigna unguiculata
ATGTCATCGTATTCTCAAAATTGCTGCCGCCGGACGTTATTTTCTGAGAC
CGTAAGAAGAGATGCAAGAAATGCTGCTGTAAATCAAATGAACGACTCCA
TCTCTTTCACAGCAAAAACATTACGGTACCATCAGAGGCAGGAAAATATG
GCGACAAGTTCGGTGAACTTGGTGGATGTTAGTAAAGCTGGTGGTGGGAA
GCTTGCATGGAATTCAAGTCAAAAGCCAATAGAGTGA
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