Vigun08g040900.1

Transcript Overview
NameVigun08g040900.1
Unique NamedrVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length309
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08chromosomeVu08:4120067..4121035 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g040900drVigUngu.IT97K.1.2.Vigun08g040900.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.exon.1Vigna unguiculataexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.CDS.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
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BLAST of Vigun08g040900.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6MCR0|A0A4D6MCR0_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g450 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.925e-64
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 
Query:    2 MSGNRELQSRCKGKKEMKAASSSPVRVRWRQQPRDGGSRERRETDPDARKRKRWRQQRRHRCTCDGGSNLVTAVRWRQQGEKREEKPLRLCDDGGSKREEI 102
            MSGNRELQSRCKGKKEMKAASSSPVRVRWRQQPRDGGSRERRETDPDARKRKRWRQQRRHRCTCDGGSNLVTAVRWRQQGEKREEKPLRLCDDGGSKREEI
Sbjct:    1 MSGNRELQSRCKGKKEMKAASSSPVRVRWRQQPRDGGSRERRETDPDARKRKRWRQQRRHRCTCDGGSNLVTAVRWRQQGEKREEKPLRLCDDGGSKREEI 101
[Close]
BLAST of Vigun08g040900.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6LU49|A0A4D6LU49_VIGUN (Aminocyclopropanecarboxylate oxidase OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g29 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.444e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0 
Query:    1 MMSGNRELQSRCKGKKEMKAASSSPVRVRWRQQPRDGGSRE 41
            M+SGNRELQSRC+GKKEM+A + SPV VRWRQQ R GG+ E
Sbjct:    1 MVSGNRELQSRCEGKKEMEAVALSPVHVRWRQQRRHGGAME 41
The following BLAST results are available for this feature:
BLAST of Vigun08g040900.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
tr|A0A4D6MCR0|A0A4D6MCR0_VIGUN2.925e-64100.00Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6LU49|A0A4D6LU49_VIGUN5.444e-1073.17Aminocyclopropanecarboxylate oxidase OS=Vigna ungu... [more]
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BLAST of Vigun08g040900.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun08g040900.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2; Name=Vigun08g040900.1; organism=Vigna unguiculata; type=mRNA; length=309bp
ATGATGTCTGGAAATCGCGAGTTACAGTCCAGATGCAAGGGAAAGAAAGA
GATGAAGGCGGCGTCGTCGTCACCAGTGCGCGTGCGATGGAGGCAGCAAC
CTCGTGATGGAGGCAGCAGGGAGAGAAGAGAAACAGATCCAGATGCGAGG
AAAAGAAAGAGATGGAGGCAACAGCGTCGTCACCGGTGCACGTGCGATGG
AGGCAGCAACCTCGTCACGGCGGTGCGATGGAGGCAGCAGGGAGAGAAGA
GAGAAGAAAAACCACTGCGACTCTGCGACGATGGAGGCAGCAAGAGAGAA
GAAATTTGA
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protein sequence of drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2

>drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=103bp
MMSGNRELQSRCKGKKEMKAASSSPVRVRWRQQPRDGGSRERRETDPDAR
KRKRWRQQRRHRCTCDGGSNLVTAVRWRQQGEKREEKPLRLCDDGGSKRE
EI*
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mRNA from alignment at Vu08:4120067..4121035+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2; Name=Vigun08g040900.1; organism=Vigna unguiculata; type=mRNA; length=969bp; location=Sequence derived from: Vu08:4120067..4121035+ (Vigna unguiculata
gtcaatgcgggttgatccagtccgtttaggcccagcccacattagaccta
caagttgtgggtcggacaatagcgcattcgcgggctggaacacacggtcc
gccccgtagatctgttggcccgcgggactgcggattagcccgcATACATT
GCTGCCATATCTCTCAATTTTGCAAAACCCCGTCAGCCACAAATTTGAAT
CCCCATATTGGAAGAAAAACCCTGCTCCAGCAAAACCCCCCTCAATTTAC
TGTCAATCGGAAAGAAAAAGATGCAATGATGTCTGGAAATCGCGAGTTAC
AGTCCAGATGCAAGGGAAAGAAAGAGATGAAGGCGGCGTCGTCGTCACCA
GTGCGCGTGCGATGGAGGCAGCAACCTCGTGATGGAGGCAGCAGGGAGAG
AAGAGAAACAGATCCAGATGCGAGGAAAAGAAAGAGATGGAGGCAACAGC
GTCGTCACCGGTGCACGTGCGATGGAGGCAGCAACCTCGTCACGGCGGTG
CGATGGAGGCAGCAGGGAGAGAAGAGAGAAGAAAAACCACTGCGACTCTG
CGACGATGGAGGCAGCAAGAGAGAAGAAATTTGACGCAATCTGGTGACGT
GATCCCTGTTGCTCCGGTGCGGTGGACCAGTGGCGTGCAATCCGACGGTG
GATGAGCACTGGAACAACAGAGCAGAGAAAGAGAGAACTGACTTTAGTAA
ACCCTAAGCTAAGTCGAGTATGCGGGTCAACGGACCAACCCGCGCGGGTC
ACGGGTCATTGCAGGCCGGACCAGTGCGGGTTTGTGAGTTTATTCTTCTG
GTCTGTCCCACGTATTTTTTGTGAATATGTTTGTCGACTCGACTTTGGGT
CAAACCTATATTACTATCCCTATTGAAATGTTGATCCAAAAAAAAATATT
TCATTTATATATTATTATAGATTTCGTATAAATTTCTTAAAAATAAGAAC
CGACTATTTTATCAGAAAC
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Coding sequence (CDS) from alignment at Vu08:4120067..4121035+

>drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g040900.1.v1.2; Name=Vigun08g040900.1; organism=Vigna unguiculata; type=CDS; length=309bp; location=Sequence derived from: Vu08:4120067..4121035+ (Vigna unguiculata
ATGATGTCTGGAAATCGCGAGTTACAGTCCAGATGCAAGGGAAAGAAAGA
GATGAAGGCGGCGTCGTCGTCACCAGTGCGCGTGCGATGGAGGCAGCAAC
CTCGTGATGGAGGCAGCAGGGAGAGAAGAGAAACAGATCCAGATGCGAGG
AAAAGAAAGAGATGGAGGCAACAGCGTCGTCACCGGTGCACGTGCGATGG
AGGCAGCAACCTCGTCACGGCGGTGCGATGGAGGCAGCAGGGAGAGAAGA
GAGAAGAAAAACCACTGCGACTCTGCGACGATGGAGGCAGCAAGAGAGAA
GAAATTTGA
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