Vigun08g059400.1

Transcript Overview
NameVigun08g059400.1
Unique NamedrVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length204
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08chromosomeVu08:7717406..7717901 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g059400drVigUngu.IT97K.1.2.Vigun08g059400.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.exon.2drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.exon.2Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.exon.1Vigna unguiculataexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.CDS.2drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.CDS.2Vigna unguiculataCDS
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.CDS.1Vigna unguiculataCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6MG27|A0A4D6MG27_VIGUN (ATP-dependent helicase/nuclease subunit A OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g2221 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.313e-40
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEE SKF
Sbjct:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEESSKF 67
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9TMP9|A0A0L9TMP9_PHAAN (ATP-dependent helicase/nuclease subunit A OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0039530 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.171e-38
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            M+PVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLN+ EE SKF
Sbjct:    1 MKPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNDLEESSKF 67
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VXE0|A0AA86VXE0_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS9053 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.213e-37
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MRP SQKWGYIRIM GTILGGILGFYVMHR+ESNYKERMNE LRNYEAELRRKKDERLNEF+E SKF
Sbjct:    1 MRPASQKWGYIRIMTGTILGGILGFYVMHRLESNYKERMNESLRNYEAELRRKKDERLNEFDESSKF 67
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371ELM5|A0A371ELM5_MUCPR (ATP-dependent helicase/nuclease subunit A (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_54226 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.213e-35
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSK 66
            MRP SQKWGYIRIM+GTILGGILGFYVMHR+E+NYKE+MNERLRNYEAEL+RKK ERLNEFEE SK
Sbjct:    1 MRPGSQKWGYIRIMSGTILGGILGFYVMHRIETNYKEKMNERLRNYEAELKRKKQERLNEFEEPSK 66
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7C9Z5|V7C9Z5_PHAVU (ATP-dependent helicase/nuclease subunit A OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G060000g PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.209e-35
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            M+P SQ+WGYIRIM+GTILGG+LGFYVMHR+ES+YKERMNERLRNYEAELRRKKDERLNEFEE S  
Sbjct:    1 MKPPSQRWGYIRIMSGTILGGVLGFYVMHRLESDYKERMNERLRNYEAELRRKKDERLNEFEESSNL 67
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0L1Y6|A0A0R0L1Y6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G139000 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.197e-33
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MR  SQKWGYIRIMAGTI GGILGFYVMHR+E+NYKE+MNERLR+YEAEL+RKKDERLNE E+ S+F
Sbjct:    3 MRTASQKWGYIRIMAGTIFGGILGFYVMHRLETNYKEKMNERLRDYEAELKRKKDERLNELEDSSRF 69
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2RKG6|A0A0B2RKG6_GLYSO (ATP-dependent helicase/nuclease subunit A OS=Glycine soja OX=3848 GN=D0Y65_003867 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.197e-33
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MR  SQKWGYIRIMAGTI GGILGFYVMHR+E+NYKE+MNERLR+YEAEL+RKKDERLNE E+ S+F
Sbjct:    3 MRTASQKWGYIRIMAGTIFGGILGFYVMHRLETNYKEKMNERLRDYEAELKRKKDERLNELEDSSRF 69
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1KIT6|I1KIT6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=106799436 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.314e-33
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MR  SQKWGYIRIMAGTI GGILGFYVMHR+E+NYKE+MNERLR+YEAEL+RKKDERLNE E+ S+F
Sbjct:    2 MRTASQKWGYIRIMAGTIFGGILGFYVMHRLETNYKEKMNERLRDYEAELKRKKDERLNELEDSSRF 68
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445JUA8|A0A445JUA8_GLYSO (ATP-dependent helicase/nuclease subunit A OS=Glycine soja OX=3848 GN=D0Y65_017303 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.314e-33
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MR  SQKWGYIRIMAGTI GGILGFYVMHR+E+NYKE+MNERLR+YEAEL+RKKDERLNE E+ S+F
Sbjct:    2 MRTASQKWGYIRIMAGTIFGGILGFYVMHRLETNYKEKMNERLRDYEAELKRKKDERLNELEDSSRF 68
[Close]
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445JUD9|A0A445JUD9_GLYSO (ATP-dependent helicase/nuclease subunit A OS=Glycine soja OX=3848 GN=D0Y65_017303 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.435e-33
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDERLNEFEEFSKF 67
            MR  SQKWGYIRIMAGTI GGILGFYVMHR+E+NYKE+MNERLR+YEAEL+RKKDERLNE E+ S+F
Sbjct:   18 MRTASQKWGYIRIMAGTIFGGILGFYVMHRLETNYKEKMNERLRDYEAELKRKKDERLNELEDSSRF 84
[Close]
BLAST of Vigun08g059400.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:6355711-6355984 FORWARD LENGTH=67)

HSP 1 Score: 71.2478 bits (173), Expect = 2.332e-18
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:    1 MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAELRRKKDE 56
            M   S  WGY RI+AGT+LGG LGFYVMHR+E +YK RM E L  YE +++++++E
Sbjct:    1 MALSSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEE 56
The following BLAST results are available for this feature:
BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6MG27|A0A4D6MG27_VIGUN8.313e-4098.51ATP-dependent helicase/nuclease subunit A OS=Vigna... [more]
tr|A0A0L9TMP9|A0A0L9TMP9_PHAAN2.171e-3894.03ATP-dependent helicase/nuclease subunit A OS=Phase... [more]
tr|A0AA86VXE0|A0AA86VXE0_9FABA4.213e-3791.04Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A371ELM5|A0A371ELM5_MUCPR4.213e-3587.88ATP-dependent helicase/nuclease subunit A (Fragmen... [more]
tr|V7C9Z5|V7C9Z5_PHAVU8.209e-3585.07ATP-dependent helicase/nuclease subunit A OS=Phase... [more]
tr|A0A0R0L1Y6|A0A0R0L1Y6_SOYBN1.197e-3382.09Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A0B2RKG6|A0A0B2RKG6_GLYSO1.197e-3382.09ATP-dependent helicase/nuclease subunit A OS=Glyci... [more]
tr|I1KIT6|I1KIT6_SOYBN1.314e-3382.09Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A445JUA8|A0A445JUA8_GLYSO1.314e-3382.09ATP-dependent helicase/nuclease subunit A OS=Glyci... [more]
tr|A0A445JUD9|A0A445JUD9_GLYSO1.435e-3382.09ATP-dependent helicase/nuclease subunit A OS=Glyci... [more]
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BLAST of Vigun08g059400.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun08g059400.1 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|2.332e-1855.36Symbols: no symbol available | no full name availa... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2; Name=Vigun08g059400.1; organism=Vigna unguiculata; type=mRNA; length=204bp
ATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTAC
AATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCTA
ACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATTG
AGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATTCTCCAAGTT
TTGA
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protein sequence of drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2

>drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=68bp
MRPVSQKWGYIRIMAGTILGGILGFYVMHRVESNYKERMNERLRNYEAEL
RRKKDERLNEFEEFSKF*
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mRNA from alignment at Vu08:7717406..7717901-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2; Name=Vigun08g059400.1; organism=Vigna unguiculata; type=mRNA; length=496bp; location=Sequence derived from: Vu08:7717406..7717901- (Vigna unguiculata
CCACATTCTCTGCAGAAATCAAGAGTGAAGAAACGATAATGAGACCTGTT
TCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTACAATCCTTGGAGG
CATCCTCGGATTCTACGTTATGCACCGTGTTGAATCTAACTACAAGGTTA
GCATACCATCACTCTCTTCTTTCTTCCCAGTTGCTTCTTCTGCCTCTTCA
ATTTTATGGCTTTCTGAAGCTAACTAATGGAGGCTTGATAGAATATTTTG
AAACCCTTTTCCCTTTTCTCTTTAAAGATTTTTTTCTTTTTTCGTGTGTT
TGATGTGGGTGTACTTGTGCTGTGTGCAGGAGAGAATGAACGAGAGGCTG
AGAAACTATGAGGCTGAATTGAGGAGGAAGAAGGACGAGAGATTGAACGA
GTTTGAGGAATTCTCCAAGTTTTGAAAAATTGTGGTTTTCTTTTCTTACT
TTTTGATGTTGTCTTTTTCTTTTTATGTTTGATTTATGAGAATAAT
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Coding sequence (CDS) from alignment at Vu08:7717406..7717901-

>drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g059400.1.v1.2; Name=Vigun08g059400.1; organism=Vigna unguiculata; type=CDS; length=204bp; location=Sequence derived from: Vu08:7717406..7717901- (Vigna unguiculata
ATGAGACCTGTTTCTCAGAAATGGGGCTACATTCGAATCATGGCCGGTAC
AATCCTTGGAGGCATCCTCGGATTCTACGTTATGCACCGTGTTGAATCTA
ACTACAAGGAGAGAATGAACGAGAGGCTGAGAAACTATGAGGCTGAATTG
AGGAGGAAGAAGGACGAGAGATTGAACGAGTTTGAGGAATTCTCCAAGTT
TTGA
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