Vigun10g046100.1

Transcript Overview
NameVigun10g046100.1
Unique NamedrVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length240
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu10chromosomeVu10:6775357..6775671 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun10g046100drVigUngu.IT97K.1.2.Vigun10g046100.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.exon.1Vigna unguiculataexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.CDS.1Vigna unguiculataCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
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BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VU80|A0A0L9VU80_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g136300 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.009e-24
Identity = 51/75 (68.00%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:    1 MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDRKNSELPPPSNPYHRGCSPITRCRGG 75
            MAEKK SMKVW F  LLLSMVA  HGK E DEMK TET  ES  RKLSD +       +NPY+RGCSPITRCRGG
Sbjct:    1 MAEKKSSMKVWIFCILLLSMVALRHGKAE-DEMKNTETHGESSGRKLSDAEIDNEHGVANPYNRGCSPITRCRGG 74
[Close]
BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SWA7|A0A0S3SWA7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G048300 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.942e-22
Identity = 49/73 (67.12%), Postives = 52/73 (71.23%), Query Frame = 0 
Query:    1 MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDRKNSELPPPSNPYHRGCSPITRCR 73
            MAEKK SMKVW F  LLLSMVA  HGK E DEMK TET  ES  RKLSD +       +NPY+RGCSPITRCR
Sbjct:    1 MAEKKSSMKVWIFCILLLSMVALRHGKAE-DEMKNTETHGESSGRKLSDAEIDNEHGVANPYNRGCSPITRCR 72
[Close]
BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7AKK6|V7AKK6_PHAVU (RALF-like protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G021500g PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.135e-17
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 0 
Query:    1 MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDRKNSELPPPSNPYHRGCSPITRCRG 74
            M EKK SMKVWF  FL+LSMVA  HG   EDE++ TETK  +  R+LSD K   L  P N Y+RGC+ I RCRG
Sbjct:    1 MGEKKCSMKVWFLCFLVLSMVALGHGNV-EDEVENTETKGVT-ERRLSDDKT--LSQPVNEYNRGCNAIHRCRG 70
[Close]
BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GGC2|A0A445GGC2_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_043138 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.262e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0 
Query:    1 MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDRKNSELPPPSNPYHRGCSPITRCRG 74
            MA+   +MKVWFF FLLLSM A +HGK   D+  + +       RKLSD+ N + P  +NPY+RGCS I RCR 
Sbjct:    1 MAQPNSNMKVWFFCFLLLSMTAINHGKL--DDKNIQKEMHGPSERKLSDQNNDK-PVAANPYNRGCSIIHRCRN 71
[Close]
BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Match: tr|K7MG37|K7MG37_SOYBN (RALF-like protein OS=Glycine max OX=3847 GN=GLYMA_16G090600 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.262e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0 
Query:    1 MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDRKNSELPPPSNPYHRGCSPITRCRG 74
            MA+   +MKVWFF FLLLSM A +HGK   D+  + +       RKLSD+ N + P  +NPY+RGCS I RCR 
Sbjct:    1 MAQPNSNMKVWFFCFLLLSMTAINHGKL--DDKNIQKEMHGPSERKLSDQNNDK-PVAANPYNRGCSIIHRCRN 71
The following BLAST results are available for this feature:
BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
tr|A0A0L9VU80|A0A0L9VU80_PHAAN1.009e-2468.00Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A0S3SWA7|A0A0S3SWA7_PHAAN1.942e-2267.12Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|V7AKK6|V7AKK6_PHAVU3.135e-1758.11RALF-like protein OS=Phaseolus vulgaris OX=3885 GN... [more]
tr|A0A445GGC2|A0A445GGC2_GLYSO3.262e-1450.00Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|K7MG37|K7MG37_SOYBN3.262e-1450.00RALF-like protein OS=Glycine max OX=3847 GN=GLYMA_... [more]
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BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun10g046100.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata L. Walp IT97K-499-35 genome v1.2
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 49..74
e-value: 7.7E-4
score: 31.8
NoneNo IPR availablePANTHERPTHR34270PROTEIN RALF-LIKE 15-RELATEDcoord: 4..75

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2; Name=Vigun10g046100.1; organism=Vigna unguiculata; type=mRNA; length=240bp
ATGGCAGAGAAAAAGTGGAGCATGAAGGTTTGGTTCTTTTGGTTTCTTCT
TCTTAGCATGGTTGCTTTCAGCCATGGCAAAACAGAAGAAGATGAAATGA
AAATGACAGAAACAAAAGAGGAAAGTTGTGTGCGTAAACTTTCCGATCGT
AAAAACTCAGAACTACCTCCTCCTTCCAATCCATACCATCGTGGCTGCTC
ACCGATAACTAGATGTCGAGGTGGTGGACCTAATCCCTAA
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protein sequence of drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2

>drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=80bp
MAEKKWSMKVWFFWFLLLSMVAFSHGKTEEDEMKMTETKEESCVRKLSDR
KNSELPPPSNPYHRGCSPITRCRGGGPNP*
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mRNA from alignment at Vu10:6775357..6775671-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2; Name=Vigun10g046100.1; organism=Vigna unguiculata; type=mRNA; length=315bp; location=Sequence derived from: Vu10:6775357..6775671- (Vigna unguiculata
TTTAAAGAAGCAACAGAGGATTTGACATGGCAGAGAAAAAGTGGAGCATG
AAGGTTTGGTTCTTTTGGTTTCTTCTTCTTAGCATGGTTGCTTTCAGCCA
TGGCAAAACAGAAGAAGATGAAATGAAAATGACAGAAACAAAAGAGGAAA
GTTGTGTGCGTAAACTTTCCGATCGTAAAAACTCAGAACTACCTCCTCCT
TCCAATCCATACCATCGTGGCTGCTCACCGATAACTAGATGTCGAGGTGG
TGGACCTAATCCCTAATTAAAAATGTCTTCTATAAGACATGTGTTACGCT
GTTTACAATTTTTTT
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Coding sequence (CDS) from alignment at Vu10:6775357..6775671-

>drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun10g046100.1.v1.2; Name=Vigun10g046100.1; organism=Vigna unguiculata; type=CDS; length=240bp; location=Sequence derived from: Vu10:6775357..6775671- (Vigna unguiculata
ATGGCAGAGAAAAAGTGGAGCATGAAGGTTTGGTTCTTTTGGTTTCTTCT
TCTTAGCATGGTTGCTTTCAGCCATGGCAAAACAGAAGAAGATGAAATGA
AAATGACAGAAACAAAAGAGGAAAGTTGTGTGCGTAAACTTTCCGATCGT
AAAAACTCAGAACTACCTCCTCCTTCCAATCCATACCATCGTGGCTGCTC
ACCGATAACTAGATGTCGAGGTGGTGGACCTAATCCCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF