Vigun03g446000.1

Transcript Overview
NameVigun03g446000.1
Unique NamedrVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length207
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu03chromosomeVu03:64761901..64763101 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvunL0022Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0209Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0377Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0538Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvunL0773Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carvunL031Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvunL012Pisum sativum Cameor genome v1aPisum sativum
ccavunL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvunL282Pisum sativum Cameor genome v1aPisum sativum
carvunL507Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavunL489Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vunvunR156Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vssvunL046Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvunL316Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vuvunL201Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvunL482Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vuvunL354Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vssvunL634Vicia sativa cv. Studenica genome v1.0Vicia sativa

Orthologs
Gene/TranscriptAssemblySpecies
evm.Ca_v2.0_00664Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
Cc_v2.0_28083.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg20826.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg39022.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_26404Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat4g006560.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun03g446000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun03g446000drVigUngu.IT97K.1.2.Vigun03g446000.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.exon.1Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.exon.2drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.exon.2Vigna unguiculataexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.five_prime_UTR.2drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.five_prime_UTR.2Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.CDS.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6KT53|A0A4D6KT53_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g58 PE=4 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.866e-41
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTSN 68
            MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTSN
Sbjct:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTSN 68          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VD52|A0AA86VD52_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS10218 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.227e-37
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD TRSQKETGKNKNSGSKGGFG+VKATASNCVKW KSLCKRKSTS
Sbjct:   46 MASEAPSWADQWGAGGIGAMEDDETRSQKETGKNKNSGSKGGFGKVKATASNCVKWLKSLCKRKSTS 112          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7C9J8|V7C9J8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G079400g PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.064e-36
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD TRSQKETGKNKNSGSKGGF +VKATASNCVKWFK LCKRKSTS
Sbjct:    1 MASEAPSWADQWGAGGIGAMEDDETRSQKETGKNKNSGSKGGFTKVKATASNCVKWFKGLCKRKSTS 67          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VNK8|A0A0L9VNK8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0150210 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-36
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTSN 68
            MAS+A SW DQWGAGGIGAMEDDVTRSQKE  KNKNSGSKGGFG+VKATASNC+KWFKSLCKRKSTSN
Sbjct:    1 MASKALSWTDQWGAGGIGAMEDDVTRSQKEIDKNKNSGSKGGFGKVKATASNCIKWFKSLCKRKSTSN 68          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8JQM9|A0A8B8JQM9_ABRPR (Uncharacterized protein LOC113848334 OS=Abrus precatorius OX=3816 GN=LOC113848334 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.153e-35
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD TRSQK+TGKNKNSG+KGGF +VKATASNCVKW KSLCKRKSTS
Sbjct:    1 MASEAPSWADQWGAGGIGAMEDDDTRSQKDTGKNKNSGAKGGFSKVKATASNCVKWIKSLCKRKSTS 67          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445G0C3|A0A445G0C3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_044555 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.751e-35
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD T SQKETGK KNSGSKGGFG+VKA+ASNCVKW KSLCKRKSTS
Sbjct:   91 MASEAPSWADQWGAGGIGAMEDDDTISQKETGKKKNSGSKGGFGKVKASASNCVKWLKSLCKRKSTS 157          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|I1MR52|I1MR52_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_17G012900 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.627e-35
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD T SQKETGK KNSGSKGGFG+VKA+ASNCVKW KSLCKRKSTS
Sbjct:    1 MASEAPSWADQWGAGGIGAMEDDDTISQKETGKKKNSGSKGGFGKVKASASNCVKWLKSLCKRKSTS 67          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445G0D7|A0A445G0D7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_044555 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 7.627e-35
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD T SQKETGK KNSGSKGGFG+VKA+ASNCVKW KSLCKRKSTS
Sbjct:    1 MASEAPSWADQWGAGGIGAMEDDDTISQKETGKKKNSGSKGGFGKVKASASNCVKWLKSLCKRKSTS 67          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9VSI8|A0A0L9VSI8_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g076200 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.513e-35
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTSN 68
            MAS+APSW DQ GAGGIGAMEDDVTRSQKE  KNKNSGSKGGF +VKATASNC+KWFKSLCKRKSTSN
Sbjct:    1 MASKAPSWTDQGGAGGIGAMEDDVTRSQKEIDKNKNSGSKGGFSKVKATASNCIKWFKSLCKRKSTSN 68          
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445EL57|A0A445EL57_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g000793 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.185e-34
Identity = 59/67 (88.06%), Postives = 60/67 (89.55%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRKSTS 67
            MASEAPSWADQWGAGGIGAMEDD T  QK+TGKNK SGSKGGFGRVKATASNCVKW KSLCKRK  S
Sbjct:   24 MASEAPSWADQWGAGGIGAMEDDATTFQKDTGKNKKSGSKGGFGRVKATASNCVKWMKSLCKRKKAS 90          
BLAST of Vigun03g446000.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3963317-3966824 REVERSE LENGTH=644)

HSP 1 Score: 61.2326 bits (147), Expect = 1.221e-12
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAM-EDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRK---STSN* 69
            MASEAPSWADQWG GGIG M  ++ T  +K+    K+  +K G  + K      V W K+L +RK   STS+*
Sbjct:  573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGKTKAGINKAKIVVFIGVNWMKNLVQRKKKDSTSS* 645          
BLAST of Vigun03g446000.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:22934905-22935108 REVERSE LENGTH=67)

HSP 1 Score: 54.6842 bits (130), Expect = 9.381e-12
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    1 MASEAPSWADQWGAGGIGAM-EDDVTRSQKETGKNKNSGSKGGFGRVKATASNCVKWFKSLCKRK 64
            MASEAPSWADQWG GGIG M E+D T+S+K+ G  KNSG        K       KW K+L  +K
Sbjct:    1 MASEAPSWADQWGTGGIGEMPEEDNTKSKKDAG-GKNSGQT---KSAKIVDFVSFKWMKNLVHKK 61          
The following BLAST results are available for this feature:
BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6KT53|A0A4D6KT53_VIGUN7.866e-41100.00Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0AA86VD52|A0AA86VD52_9FABA7.227e-3795.52Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|V7C9J8|V7C9J8_PHAVU1.064e-3694.03Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A0L9VNK8|A0A0L9VNK8_PHAAN8.959e-3689.71Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A8B8JQM9|A0A8B8JQM9_ABRPR1.153e-3591.04Uncharacterized protein LOC113848334 OS=Abrus prec... [more]
tr|A0A445G0C3|A0A445G0C3_GLYSO5.751e-3591.04Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1MR52|I1MR52_SOYBN7.627e-3591.04Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|A0A445G0D7|A0A445G0D7_GLYSO7.627e-3591.04Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|A0A0L9VSI8|A0A0L9VSI8_PHAAN8.513e-3588.24Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A445EL57|A0A445EL57_ARAHY6.185e-3488.06Uncharacterized protein OS=Arachis hypogaea OX=381... [more]
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BLAST of Vigun03g446000.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun03g446000.1 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|1.221e-1246.58Symbols: no symbol available | no full name availa... [more]
|9.381e-1252.31Symbols: no symbol available | no full name availa... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2; Name=Vigun03g446000.1; organism=Vigna unguiculata; type=mRNA; length=207bp
ATGGCAAGTGAAGCTCCAAGTTGGGCTGATCAATGGGGTGCTGGTGGTAT
TGGTGCCATGGAAGATGATGTCACAAGATCTCAGAAGGAAACAGGAAAGA
ACAAGAATTCAGGTTCTAAGGGTGGTTTCGGCAGAGTCAAAGCAACTGCT
TCAAATTGTGTCAAATGGTTCAAAAGCCTCTGCAAAAGAAAGAGTACATC
CAATTAA
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protein sequence of drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2

>drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=69bp
MASEAPSWADQWGAGGIGAMEDDVTRSQKETGKNKNSGSKGGFGRVKATA
SNCVKWFKSLCKRKSTSN*
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mRNA from alignment at Vu03:64761901..64763101+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2; Name=Vigun03g446000.1; organism=Vigna unguiculata; type=mRNA; length=1201bp; location=Sequence derived from: Vu03:64761901..64763101+ (Vigna unguiculata
AAAGTGTCCAACAACGTTGGATGAGAATTGACAAATACCATTGGCCTTCT ATGACAATGCCTCACAAACCACACCAAGCCTCAACAAAGACCTTACCCAA CTCACACACTATACTATTATTATGAGATAAGGTTTAGTATTTATTTCAAA TTAAAAAAAAACTAGGAAAGATGGCGCACATAGTTTGCTTAACCAGATGG GAATACTCAAACAAATAGGTGAGTTGTCAAGTCCTGTTATGAAAAAGATA AAGATAAATTAGGAAAAGGAAAAGCAATGTAacataacatttcaatatat atacatatatatatcatttccatCAGTCCTCCTTCTGTACCTTTTAAATT TGAAGTCTTTCATCAACCATTCTTCTGCATCAAAAATCTCAGTCATTCCA TTTGGAGGTATTGCTCCTGTCTTTAAGCTTTTCTGTCTCAAGTTTTCACC ACATGCACTAGCCAAGTATTTCTAGATTTGAAAGATTTTATTAGATGTGT CTTGCAATTTATATGAATTCATGATCACGTGCCCGATTCATGATCTATCA TATTTTGAAGAAAAGTACTTAAATTTATTATTCCCTCGTTCAGCATAAGA TTCAAGTTGGCTACTGCAAATTCAGAAAAGCCTCACTATTAGAGTGTTCT GTAGCAATGATTGTTGAGATTTTGTCTCTTCGTATCTGAAAGGTTTAAGA TTGTTTTATGGTGAAGGCAACAACAGTGAAAGATGGCAAGTGAAGCTCCA AGTTGGGCTGATCAATGGGGTGCTGGTGGTATTGGTGCCATGGAAGATGA TGTCACAAGATCTCAGAAGGAAACAGGAAAGAACAAGAATTCAGGTTCTA AGGGTGGTTTCGGCAGAGTCAAAGCAACTGCTTCAAATTGTGTCAAATGG TTCAAAAGCCTCTGCAAAAGAAAGAGTACATCCAATTAATGTATAATGTG TGAACTACTACTTCACCACTATGGCAGCAGTTTTGTAGCCTTTTTTTTTC ACCTCTTTTAATGAATTGAAGATGTATCAGACAGTTAAGGTTGATTGAAT GACATTACTTAATTATGGAGGAAGATGCTCTTTAAATTTAGCATTATTAA CACTGCATGATTGATTGCGTACGAGTTAAGACATCTTTTAGGATAGCATG TCATTGTTTTGCTTAATTATGCATCATTAGTAATAGGTTAAAAATAAAGG T
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Coding sequence (CDS) from alignment at Vu03:64761901..64763101+

>drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun03g446000.1.v1.2; Name=Vigun03g446000.1; organism=Vigna unguiculata; type=CDS; length=207bp; location=Sequence derived from: Vu03:64761901..64763101+ (Vigna unguiculata
ATGGCAAGTGAAGCTCCAAGTTGGGCTGATCAATGGGGTGCTGGTGGTAT
TGGTGCCATGGAAGATGATGTCACAAGATCTCAGAAGGAAACAGGAAAGA
ACAAGAATTCAGGTTCTAAGGGTGGTTTCGGCAGAGTCAAAGCAACTGCT
TCAAATTGTGTCAAATGGTTCAAAAGCCTCTGCAAAAGAAAGAGTACATC
CAATTAA
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