Vigun01g016300.1

Transcript Overview
NameVigun01g016300.1
Unique NamedrVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length192
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01chromosomeVu01:1773533..1774766 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g016300drVigUngu.IT97K.1.2.Vigun01g016300.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.exon.1Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.exon.2drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.exon.2Vigna unguiculataexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.CDS.1Vigna unguiculataCDS
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.CDS.2drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.CDS.2Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M434|A0A4D6M434_VIGUN (Late embryogenesis abundant protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g203 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.508e-33
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKKG 63
            MQAVKEKIVSLNATRK RQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKKG
Sbjct:    1 MQAVKEKIVSLNATRKARQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKKG 63
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UKQ0|A0A0L9UKQ0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0211020 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.247e-29
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKK 62
            MQAVKEKI++LNATRK RQEA+AEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVAN GK+
Sbjct:    1 MQAVKEKIMNLNATRKARQEARAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANAGKR 62
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8K0MJ73|A0A8K0MJ73_9ROSA (Late embryogenesis abundant protein, LEA-25/LEA-D113 OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR12777 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.382e-19
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKKG 63
            MQAVK+K+  +NA RK + EA+AEE+AEKEIAKAR++VA E+RLAKEAEA MDLHVA  G+K 
Sbjct:    1 MQAVKDKLSDMNAMRKAKNEARAEEKAEKEIAKARIEVAHEVRLAKEAEAVMDLHVAKAGQKA 63
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072TZA1|A0A072TZA1_MEDTR (Late embryogenesis abundant protein OS=Medicago truncatula OX=3880 GN=MTR_7g034335 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.749e-19
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKKG 63
            MQAVK+K+  +NA RK R EAKA+E+AEKEIA+AR+D+A E+RLAKEAEA+MDLHV   G++ 
Sbjct:    1 MQAVKDKLQDMNAMRKARAEAKAQEKAEKEIAQARVDIAHEVRLAKEAEAQMDLHVTKAGERA 63
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2N9GFH6|A0A2N9GFH6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25863 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.343e-18
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKK 62
            MQAVKEK+  ++  RK + +AKAEE+AEK+IAKARMDVA E+RLAKEAEAEM+LHVA  G+K
Sbjct:    1 MQAVKEKLHDMSEMRKAKAQAKAEEKAEKDIAKARMDVAHEVRLAKEAEAEMELHVAKAGEK 62
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7N2LFZ1|A0A7N2LFZ1_QUELO (Late embryogenesis abundant protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.752e-18
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKK 62
            MQAVK+K+  ++  RK + +AKAEE+AEK IAKARMDVA E+RLAKEAEAEM+LHVA  G+K
Sbjct:    1 MQAVKDKLHDMSEMRKVKSQAKAEEKAEKSIAKARMDVAHEVRLAKEAEAEMELHVAKAGQK 62
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N5HH52|A0A5N5HH52_9ROSA (Late embryogenesis abundant protein 6-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_020586 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.152e-18
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTG 60
            MQAVK+KI  + A RK ++EA+AEERAEKEIAKAR+DVA E+RLAKEAEA M LHVA  G
Sbjct:    1 MQAVKDKINEMGALRKVKKEARAEERAEKEIAKARVDVAHEVRLAKEAEAAMSLHVAMAG 60
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A251VRB6|A0A251VRB6_HELAN (Late embryogenesis abundant protein, LEA_1 subgroup OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0020571 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.267e-17
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHV 56
            MQA+K+KI  LNATRK R EAK EE+AEK++AK+R +VA EIRLA+EAEA MD+HV
Sbjct:    1 MQAIKDKITDLNATRKARSEAKQEEKAEKDLAKSRAEVAHEIRLAREAEASMDMHV 56
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SPG4|A0AA86SPG4_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS17911 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.164e-17
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKK 62
            MQAVKEK++S+NATRK RQEAKAEE+AEKEIAKARMDVAREIRLAK+AEAEMDLHVAN G++
Sbjct:    1 MQAVKEKLISMNATRKARQEAKAEEKAEKEIAKARMDVAREIRLAKQAEAEMDLHVANAGRR 62
[Close]
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2N9EIM9|A0A2N9EIM9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3239 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.251e-17
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0 
Query:    1 MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEAEMDLHVANTGKK 62
            + AVKEK+  ++  RK + +AKAEE+AEK+IAKARMDVA E+RLAKEAEAEM+LHVA  G+K
Sbjct:   13 LNAVKEKLHDMSEMRKAKAQAKAEEKAEKDIAKARMDVAHEVRLAKEAEAEMELHVAKAGEK 74
The following BLAST results are available for this feature:
BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6M434|A0A4D6M434_VIGUN3.508e-3398.41Late embryogenesis abundant protein OS=Vigna ungui... [more]
tr|A0A0L9UKQ0|A0A0L9UKQ0_PHAAN4.247e-2990.32Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A8K0MJ73|A0A8K0MJ73_9ROSA4.382e-1968.25Late embryogenesis abundant protein, LEA-25/LEA-D1... [more]
tr|A0A072TZA1|A0A072TZA1_MEDTR4.749e-1965.08Late embryogenesis abundant protein OS=Medicago tr... [more]
tr|A0A2N9GFH6|A0A2N9GFH6_FAGSY1.343e-1869.35Uncharacterized protein OS=Fagus sylvatica OX=2893... [more]
tr|A0A7N2LFZ1|A0A7N2LFZ1_QUELO4.752e-1867.74Late embryogenesis abundant protein OS=Quercus lob... [more]
tr|A0A5N5HH52|A0A5N5HH52_9ROSA7.152e-1871.67Late embryogenesis abundant protein 6-like OS=Pyru... [more]
tr|A0A251VRB6|A0A251VRB6_HELAN1.267e-1769.64Late embryogenesis abundant protein, LEA_1 subgrou... [more]
tr|A0AA86SPG4|A0AA86SPG4_9FABA2.164e-1785.48Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A2N9EIM9|A0A2N9EIM9_FAGSY4.251e-1766.13Uncharacterized protein OS=Fagus sylvatica OX=2893... [more]
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BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun01g016300.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata L. Walp IT97K-499-35 genome v1.2
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005513Late embryogenesis abundant protein, LEA_1 subgroupPFAMPF03760LEA_1coord: 1..59
e-value: 1.9E-7
score: 42.9
IPR005513Late embryogenesis abundant protein, LEA_1 subgroupPANTHERPTHR33493LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATEDcoord: 1..61

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2; Name=Vigun01g016300.1; organism=Vigna unguiculata; type=mRNA; length=192bp
ATGCAAGCTGTGAAAGAAAAGATAGTAAGTTTGAATGCTACACGCAAGAC
AAGACAAGAAGCAAAGGCCGAAGAAAGGGCCGAGAAAGAGATAGCGAAAG
CTAGAATGGATGTGGCTCGTGAGATTAGGTTGGCGAAAGAAGCAGAAGCA
GAAATGGATCTTCATGTAGCAAATACAGGAAAAAAGGGTTAA
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protein sequence of drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2

>drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=64bp
MQAVKEKIVSLNATRKTRQEAKAEERAEKEIAKARMDVAREIRLAKEAEA
EMDLHVANTGKKG*
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mRNA from alignment at Vu01:1773533..1774766+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2; Name=Vigun01g016300.1; organism=Vigna unguiculata; type=mRNA; length=1234bp; location=Sequence derived from: Vu01:1773533..1774766+ (Vigna unguiculata
TTGTAACATGTTTTTGAAGCAACACTTTGAAATAGAAAGCCTGAAAGTAT
TAGAAAAACAATGCAAGCTGTGAAAGAAAAGATAGTAAGTTTGAATGCTA
CACGCAAGACAAGACAAGAAGCAAAGGCCGAAGAAAGGGTACTCCAATAA
TTAAGATTATTAAACCTATAATTTAACTTCAATCTTTTTTATTTTTCTTA
TCGACaattgtcagtcgttaatatttgtttgcggaaaaagttgaacccag
aacctttccatcctctattctatatcccaccaaaccaactttatttctca
gaattgttaatagaagatattgacccacgacctttccttctatttctttg
tgtcactaaaccaccttatcattactaaCCTATGATGTTCCCacatgttt
cataaatggcgtgtcccgtatccgacatgtatcggacaccgacactcgta
caatacttataggacacattatgtccaatctaaaaaatatttttttatct
ttgatatgattttgatgattaaaaaaaggaacaaatcttattctatcact
acttttcgcatattggatattagatagatatatttgattcatttttgtat
tagttgaagatgtgatagttgacagtttcaaacttaacatgtatatacac
gctgtgtctcgtgtcctatattttttcaatttaaccgtatctctgtatcc
gtatccgtgtggtatccgTACCCATGTCCGTATCCGAACAACATAGCTCG
TAACTTTAATCTGTTTGATTAAGATTGAAAGAGGAATATTTTGAATGGTT
TTGCAGGCCGAGAAAGAGATAGCGAAAGCTAGAATGGATGTGGCTCGTGA
GATTAGGTTGGCGAAAGAAGCAGAAGCAGAAATGGATCTTCATGTAGCAA
ATACAGGAAAAAAGGGTTAACCAAGAAATATATAAGTTCACTGCTAATAA
TCCCAATCTGGTTGAAGAAGTAAGTCTCATGGATGAGGCAACAAAACCAA
AACACGCAAGAAAAACAACAACTGTTACTACTTACACAAACTAACTCCAT
CAAAATGTATATATAGATTAACTTATTTTAATTAACAAAATATAATTACA
TATATTTGTACATTATTAAGACAAATTTGGAAGGTACTCCACCTATGAAA
TGTTTTTGTAATCTTATCACTCATCATTTTGATGTATATAAATTTCTTTT
GTATTTTCTCTATATGTATTGGTTTCTCTTTGTA
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Coding sequence (CDS) from alignment at Vu01:1773533..1774766+

>drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g016300.1.v1.2; Name=Vigun01g016300.1; organism=Vigna unguiculata; type=CDS; length=192bp; location=Sequence derived from: Vu01:1773533..1774766+ (Vigna unguiculata
ATGCAAGCTGTGAAAGAAAAGATAGTAAGTTTGAATGCTACACGCAAGAC
AAGACAAGAAGCAAAGGCCGAAGAAAGGGCCGAGAAAGAGATAGCGAAAG
CTAGAATGGATGTGGCTCGTGAGATTAGGTTGGCGAAAGAAGCAGAAGCA
GAAATGGATCTTCATGTAGCAAATACAGGAAAAAAGGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005513LEA_1
Vocabulary: Biological Process
TermDefinition
GO:0009793embryo development ending in seed dormancy