Ca_01897, Ca_01897_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01897
Unique NameCa_01897_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length351
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:33599817..33600167 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01897-CDS1Ca_01897-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01897_v1.0_kabuliCa_01897_v1.0_kabuliCicer arietinumpolypeptide


Homology
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BLAST of Ca_01897 vs. TrEMBL
Match: I1MW58_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.184e-22
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:  121 RQFGSYLPLVLKGELRGANPSTRGLGWANLWCTGCYANSSAGLLSWYGRTAAP 279
            RQFGSYLPLVLKG+LRGANPS RGLGWANLWCTGCYANSS GLLSWYGRT AP
Sbjct:    8 RQFGSYLPLVLKGKLRGANPSMRGLGWANLWCTGCYANSSVGLLSWYGRTVAP 60
The following BLAST results are available for this feature:
BLAST of Ca_01897 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
I1MW58_SOYBN1.184e-2292.45Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
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BLAST of Ca_01897 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01897_v1.0_kabuli ID=Ca_01897_v1.0_kabuli; Name=Ca_01897; organism=Cicer arietinum; type=mRNA; length=351bp
ATGGAGTCCTTGCTTAGCCGAGCTGGAAGCTATACTCTAGGCGGGCTGAG
AATCCTCTTCCTTTCCTCCCGATTGGCAATGATATCTCTTTCTTCTGCCA
TTGCGAGACAAGACAGCTTCCGACAGTTCGGTTCCTATCTACCGTTGGTG
TTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTG
GGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCTGC
TAAGTTGGTATGGAAGAACTGCTGCGCCGCGCAAGCTTGGATGCCCCTAC
TCCCAACAAGTTGCTGGTCGGGATCGTGAAACTATCGCTGTTTGGTCATA
A
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protein sequence of Ca_01897_v1.0_kabuli

>Ca_01897_v1.0_kabuli ID=Ca_01897_v1.0_kabuli; Name=Ca_01897_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=116bp
MESLLSRAGSYTLGGLRILFLSSRLAMISLSSAIARQDSFRQFGSYLPLV
LKGELRGANPSTRGLGWANLWCTGCYANSSAGLLSWYGRTAAPRKLGCPY
SQQVAGRDRETIAVWS
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mRNA from alignment at Ca5:33599817..33600167-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01897_v1.0_kabuli ID=Ca_01897_v1.0_kabuli; Name=Ca_01897; organism=Cicer arietinum; type=mRNA; length=351bp; location=Sequence derived from: Ca5:33599817..33600167- (Cicer arietinum
ATGGAGTCCTTGCTTAGCCGAGCTGGAAGCTATACTCTAGGCGGGCTGAG
AATCCTCTTCCTTTCCTCCCGATTGGCAATGATATCTCTTTCTTCTGCCA
TTGCGAGACAAGACAGCTTCCGACAGTTCGGTTCCTATCTACCGTTGGTG
TTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTG
GGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCTGC
TAAGTTGGTATGGAAGAACTGCTGCGCCGCGCAAGCTTGGATGCCCCTAC
TCCCAACAAGTTGCTGGTCGGGATCGTGAAACTATCGCTGTTTGGTCATA
A
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Coding sequence (CDS) from alignment at Ca5:33599817..33600167-

>Ca_01897_v1.0_kabuli ID=Ca_01897_v1.0_kabuli; Name=Ca_01897; organism=Cicer arietinum; type=CDS; length=351bp; location=Sequence derived from: Ca5:33599817..33600167- (Cicer arietinum
ATGGAGTCCTTGCTTAGCCGAGCTGGAAGCTATACTCTAGGCGGGCTGAG
AATCCTCTTCCTTTCCTCCCGATTGGCAATGATATCTCTTTCTTCTGCCA
TTGCGAGACAAGACAGCTTCCGACAGTTCGGTTCCTATCTACCGTTGGTG
TTAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTG
GGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCTGC
TAAGTTGGTATGGAAGAACTGCTGCGCCGCGCAAGCTTGGATGCCCCTAC
TCCCAACAAGTTGCTGGTCGGGATCGTGAAACTATCGCTGTTTGGTCATA
A
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