Ca_09782.1, Ca_09782.1_ICC4958_v2 (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_09782.1 vs. DB:Swiss
Match: SIP_ARATH (Signal peptide peptidase OS=Arabidopsis thaliana OX=3702 GN=SPP PE=2 SV=1) HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0 Identity = 272/319 (85.27%), Postives = 295/319 (92.48%), Query Frame = 1
Query: 1 MKNTERIANLALAGLTLAPLVVKIDPNVNVILTACVTVFVGCYRSVKPTPPAETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHWNEDLIVWHFPYFRSLEIEFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTSDSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
MKN ER ANLALAGLTLAPLVV+++PN+NVILTAC+TV+VGC+RSVK TPP ETMS EHAMRFP VGSAMLLSLFLLFKFLSKDLVN VLT YFFVLGIVALSATLLP+I+RFLP WN++LIVW FPYF+SLE+EFTKSQ+VA IPGTFFC WYA +KHWLANNILGL+FCIQGIEMLSLGSFKTGAILL GLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ RP+SMLGLGDIVIPGIFVALALRFDVSR +QPQYF SAF+GY G+ LTIVVMNWFQAAQPALLYIVPAVIGFLA+HCIWNGD+K LL F
Sbjct: 1 MKNCERFANLALAGLTLAPLVVRVNPNLNVILTACITVYVGCFRSVKDTPPTETMSKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWNDNLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLSLGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDIVIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVIGFLASHCIWNGDIKPLLAF 319
BLAST of Ca_09782.1 vs. DB:Swiss
Match: SIP2_ORYSJ (Signal peptide peptidase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SPP2 PE=2 SV=1) HSP 1 Score: 519.62 bits (1337), Expect = 0.000e+0 Identity = 264/319 (82.76%), Postives = 289/319 (90.60%), Query Frame = 1
Query: 1 MKNTERIANLALAGLTLAPLVVKIDPNVNVILTACVTVFVGCYRSVKPTPPAETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHWNEDLIVWHFPYFRSLEIEFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTSDSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
MK ER ANLALAGL+LAPLVVK++PN NVILTAC+ V+VGCYRSVKPTPPAETMS EHAMRFP VGSAMLLSLFLLFKFLSKDLVNTVLT YFF+LGI AL ATLLPSIKRFLPK WN++ IVW P F SL +EFT+SQ+VA+IPG FFC WYA +KHWLANN+LG++FCIQGIEMLSLGSFKTGAILL GLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDIVIPGIFVALALRFDVSRG + +YF SAFLGYT GL +TI+VMNWFQAAQPALLYIVP VIGF+A HC+WNG+VK LLE+
Sbjct: 1 MKTHERAANLALAGLSLAPLVVKVNPNANVILTACLAVYVGCYRSVKPTPPAETMSKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDIVIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVIGFVAVHCLWNGEVKPLLEY 319
BLAST of Ca_09782.1 vs. DB:Swiss
Match: SIP1_ORYSJ (Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPP1 PE=2 SV=1) HSP 1 Score: 519.62 bits (1337), Expect = 0.000e+0 Identity = 264/319 (82.76%), Postives = 290/319 (90.91%), Query Frame = 1
Query: 1 MKNTERIANLALAGLTLAPLVVKIDPNVNVILTACVTVFVGCYRSVKPTPPAETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHWNEDLIVWHFPYFRSLEIEFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTSDSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
MK ER ANLALAGL+LAPLVVK++PNVNVILTAC+ V+VGCYRSVKPTPP+ETMS EHAMRFP VGSAMLLSLFLLFKFLSKDLVN VLT YFF+LGI AL ATLLPSIKRFLPK WN++ IVW P+F SL +EFTKSQ+VA+IPG FFC WYA +KHWLANN+LG++FCIQGIEMLSLGSFKTGAILL GLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPT D+ARPFSMLGLGDIVIPGIFVALALRFDVSRG + +YF SAFLGYT GL +TI+VMNWFQAAQPALLYIVP VIGF+A HC+WNG+VK LLE+
Sbjct: 1 MKTHERAANLALAGLSLAPLVVKVEPNVNVILTACLAVYVGCYRSVKPTPPSETMSKEHAMRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWCAPFFHSLSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDIVIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVIGFVAVHCLWNGEVKPLLEY 319
BLAST of Ca_09782.1 vs. DB:Swiss
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus OX=10090 GN=Hm13 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 5.530e-71 Identity = 141/309 (45.63%), Postives = 192/309 (62.14%), Query Frame = 1
Query: 85 NVILTACVTVFVGCYRSVK------PTPPAETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHW---NEDLIVWHFPYFRSLEI---EFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTS-----DSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQ-YFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
+++L A + +F G RSV+ + ET+++ A RFP + S LL L+L FK S++ +N +L++YFFVLGI+ALS T+ P + +F P ++ L+ EI EF +V + WY L+KHW+ANN+ GLAF + G+E+L L + TG ILL GLF YDIFWVF T VMV+VAKSF+APIKL+FP A F+MLGLGDIVIPGIF+AL LRFD+S K YF ++F Y FGL LTI +M+ F+ AQPALLY+VPA IGF + G+V ++ +
Sbjct: 38 SLLLMALLPIFFGALRSVRCARGKSSSDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPANFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSY 346
BLAST of Ca_09782.1 vs. DB:Swiss
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens OX=9606 GN=HM13 PE=1 SV=1) HSP 1 Score: 227.254 bits (578), Expect = 1.998e-70 Identity = 139/309 (44.98%), Postives = 191/309 (61.81%), Query Frame = 1
Query: 85 NVILTACVTVFVGCYRSVK------PTPPAETMSNEHAMRFPFVGSAMXXXXXXXXXXXXXDLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHW---NEDLIVWHFPYFRSLEI---EFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTS-----DSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQ-YFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
+++L A + +F G RSV+ + ET+++ A RFP + S LL L+L FK S++ +N +L++YFFVLGI+ALS T+ P + +F P + L+ EI EF +V + WY L+KHW+ANN+ GLAF + G+E+L L + TG ILL GLF YD+FWVF T VMV+VAKSF+APIKL+FP A F+MLGLGD+VIPGIF+AL LRFD+S K YF ++F Y FGL LTI +M+ F+ AQPALLY+VPA IGF + G+V ++ +
Sbjct: 38 SLLLMALLPIFFGALRSVRCARGKNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSY 346
BLAST of Ca_09782.1 vs. DB:Swiss
Match: IMP2_CAEEL (Intramembrane protease 2 OS=Caenorhabditis elegans OX=6239 GN=imp-2 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 4.093e-45 Identity = 101/208 (48.56%), Postives = 126/208 (60.58%), Query Frame = 1
Query: 400 EIEFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTS------DSARPFSMLGLGDIVIPGIFVALALRFD------VSRGKQPQ-------YFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVP---------AVI-GFLAAHCIWNGD 936
+I+F + I+A + + + L++HW+ NNI+G++F I GIE L L SFK G++LLVGLFFYDIFWVF T VM SVAK DAPI L FP A SMLGLGDIVIPGIF+AL RFD + K PQ YF + Y GL +T+ VM+ F+AAQPALLY+VP AVI G L+A +WN D
Sbjct: 242 KIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLASFKAGSLLLVGLFFYDIFWVFGTDVMTSVAKGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSA--LWNYD 447
BLAST of Ca_09782.1 vs. DB:Swiss
Match: YL8H_SCHPO (Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25B8.17 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 5.063e-38 Identity = 92/251 (36.65%), Postives = 135/251 (53.78%), Query Frame = 1
Query: 250 DLVNTVLTLYFFVLGIVALSATLLPSIKRFLPKHWNEDLIVWHFP-------YFRSLEIEFTKSQIVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTSDSARPFSMLGLGDIVIPGIFVALALRFD----VSRGKQPQ----YFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQLLEF 957
L+N L + F + G V L L+ R+L K + + LI+ + + RS + T +I A + +Y KHW+A+NIL A I ++ + S+ TGA+LL LFFYDI++VF T VMV+VA D P K + P + SMLGLGDIV+PG+ +AL RFD ++ QP+ YF++ F+ Y GL +T + +F+AAQPALLY+ PA I + ++K L F
Sbjct: 31 QLINKRLAVLFPIFGGVTL--VLMYLALRYLSKEYIQ-LILQGYASLASIICFVRSFNPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLLGALFFYDIYFVFGTEVMVTVATGIDIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSF 278
BLAST of Ca_09782.1 vs. DB:Swiss
Match: YKK0_YEAST (Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YKL100C PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.514e-28 Identity = 69/179 (38.55%), Postives = 101/179 (56.42%), Query Frame = 1
Query: 481 WLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFP----TSDSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQP---------------QYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPA-VIGFLAAHCIWNGDVKQLLEF 957
WL +N + + I I L L + K+GA++L+ LFFYDI +VF T VMV+VA + D P+KL P T+ + FS+LGLGDI +PG+F+A+ ++D+ + +YF +A + Y L +V ++ F AQPALLYIVP+ +I + C WN D KQ F
Sbjct: 329 WLISNAVSMNMAIWSIAQLKLKNLKSGALILIALFFYDICFVFGTDVMVTVATNLDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVAC-WNKDFKQFWNF 506
BLAST of Ca_09782.1 vs. DB:Swiss
Match: SIPL1_ORYSJ (Signal peptide peptidase-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL1 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.615e-25 Identity = 78/223 (34.98%), Postives = 105/223 (47.09%), Query Frame = 1
Query: 391 RSLEIEFTKSQ--IVAAIPGTFFCGWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTP------VMVSVA------------------------KSFDAPIKLLFPTS--------DSARPFSMLGLGDIVIPGIFVALALRFDVSR------------GKQPQYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIG 903
R FT+ Q +VA GT + + HWL NN+LG++ CI + + L + K A+LLV LF YD+FWVFF+ VMVSVA K + P+KL+FP S S + MLGLGD+ IPG+ +AL L FD + KQ +Y A GY GL + Q+ QPALLY+VP+ +G
Sbjct: 119 RCCSKPFTRLQGLLVAICVGTVVA--WLVSGHWLLNNLLGISICIAFVSHVRLPNIKICALLLVCLFVYDVFWVFFSERFFGANVMVSVATQKASNPVHTVANKLSLPGLQLITKKLELPVKLVFPRSLMGGLAPGSSPGDYMMLGLGDMAIPGMLLALVLSFDHRKIKDMSVSQDMPPSKQRKYVWYALTGYGVGLVTALAAGILSQSPQPALLYLVPSTLG 339
BLAST of Ca_09782.1 vs. DB:Swiss
Match: SIPL3_ORYSJ (Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL3 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.748e-24 Identity = 60/169 (35.50%), Postives = 94/169 (55.62%), Query Frame = 1
Query: 481 WLANNILGLAFCIQGIEMLSLGSFKTGAILLVGLFFYDIFWVFFTP------VMVSVAKSFDA----PIKLLFPTS-DSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQ--PQYFKSAFLGYTFGLALTIVVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGDVKQL 948
W+ +++G+ I ++++ L + K LLV F YDIFWVF +P VM++VA+ D P+ L P D+ + M+G GDI+ PG+ VA + R+D + GK YF +GY FGL+ T V + ++ QPALLY+VP+ +G + G++ QL
Sbjct: 350 WVGQDLMGICMMILVLQVVHLPNIKVATALLVSAFMYDIFWVFISPFIFKKSVMITVARGSDEGPSLPMVLKMPKEFDTWNGYDMIGFGDILFPGLLVAFSFRYDRANGKDLTDGYFLCLMIGYAFGLSCTYVGLYLMKSGQPALLYLVPSTLGTIVTLGAKRGELSQL 518 The following BLAST results are available for this feature:
BLAST of Ca_09782.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_09782.1_ICC4958_v2 ID=Ca_09782.1_ICC4958_v2; Name=Ca_09782.1; organism=Cicer arietinum; type=mRNA; length=6665bpback to top protein sequence of Ca_09782.1_ICC4958_v2 >Ca_09782.1_ICC4958_v2 ID=Ca_09782.1_ICC4958_v2; Name=Ca_09782.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=340bpback to top mRNA from alignment at Ca_LG_4:22284233..22290897- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_09782.1_ICC4958_v2 ID=Ca_09782.1_ICC4958_v2; Name=Ca_09782.1; organism=Cicer arietinum; type=mRNA; length=6665bp; location=Sequence derived from: Ca_LG_4:22284233..22290897- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca_LG_4:22284233..22290897- >Ca_09782.1_ICC4958_v2 ID=Ca_09782.1_ICC4958_v2; Name=Ca_09782.1; organism=Cicer arietinum; type=CDS; length=1023bp; location=Sequence derived from: Ca_LG_4:22284233..22290897- (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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