Ca_14424.1, Ca_14424.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_14424.1
Unique NameCa_14424.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length591
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_5supercontigCa_LG_5:37889614..37890204 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_14424Ca_14424_ICC4958_v2Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_14424.1.exon1Ca_14424.1.exon1_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_14424.1.cds1Ca_14424.1.cds1_ICC4958_v2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_14424.1_ICC4958_v2Ca_14424.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Ca_14424.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38221FAMILY NOT NAMEDcoord: 7..39
coord: 136..185

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_14424.1_ICC4958_v2 ID=Ca_14424.1_ICC4958_v2; Name=Ca_14424.1; organism=Cicer arietinum; type=mRNA; length=591bp
ATGAATGTTGAAGCACATGAAGACGACCCTTTTGGGTTTATTATTGAAGA
ATACAAAATATCCCTTTCCCAAGAGGAACTCTTACGTAACACTCCCTTAG
TCGGAGATTACTCCTACCAACCCCCCATTCTTCCTTCTCTTACCCCCCCT
CTCCCTCCCCCCGTTCCTTCTCTTACTCCTCTTCTTCATCATTGTACTCT
TAATCTCGCCTCTGATATTGACGATCACTTCCATTGCTTCGTTGATTTAA
CTCAGGATTCTGATTTAGGGTTTTCTCACCCTCATCCCAATCATAATGGT
ATCGAACAACCCCTCCAGGAGAACCACAATAATCTCCAAACTCAACAACC
TTCTCCAATGTCTGAACTAATCCGATTTCTTTTGGATAAGGCTACTCAAT
CTGGCAACGATCATTTTTCTGTTTTTGATGTATTGCAATTTCTCGCGATA
AAGAGGAGTGGTACTGAAGTTCCAGTTCAACTCAATGGTCTTTCTGTGTT
GGAAGTTGCAAAGCTTGCTCATATTACTTTTCCTCGCCCAAGGTGGTGGC
CTCACCATTTTCAATCCAAATTATTCAACTTCCATGATTAA
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protein sequence of Ca_14424.1_ICC4958_v2

>Ca_14424.1_ICC4958_v2 ID=Ca_14424.1_ICC4958_v2; Name=Ca_14424.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=196bp
MNVEAHEDDPFGFIIEEYKISLSQEELLRNTPLVGDYSYQPPILPSLTPP
LPPPVPSLTPLLHHCTLNLASDIDDHFHCFVDLTQDSDLGFSHPHPNHNG
IEQPLQENHNNLQTQQPSPMSELIRFLLDKATQSGNDHFSVFDVLQFLAI
KRSGTEVPVQLNGLSVLEVAKLAHITFPRPRWWPHHFQSKLFNFHD
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mRNA from alignment at Ca_LG_5:37889614..37890204+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_14424.1_ICC4958_v2 ID=Ca_14424.1_ICC4958_v2; Name=Ca_14424.1; organism=Cicer arietinum; type=mRNA; length=591bp; location=Sequence derived from: Ca_LG_5:37889614..37890204+ (Cicer arietinum
ATGAATGTTGAAGCACATGAAGACGACCCTTTTGGGTTTATTATTGAAGA
ATACAAAATATCCCTTTCCCAAGAGGAACTCTTACGTAACACTCCCTTAG
TCGGAGATTACTCCTACCAACCCCCCATTCTTCCTTCTCTTACCCCCCCT
CTCCCTCCCCCCGTTCCTTCTCTTACTCCTCTTCTTCATCATTGTACTCT
TAATCTCGCCTCTGATATTGACGATCACTTCCATTGCTTCGTTGATTTAA
CTCAGGATTCTGATTTAGGGTTTTCTCACCCTCATCCCAATCATAATGGT
ATCGAACAACCCCTCCAGGAGAACCACAATAATCTCCAAACTCAACAACC
TTCTCCAATGTCTGAACTAATCCGATTTCTTTTGGATAAGGCTACTCAAT
CTGGCAACGATCATTTTTCTGTTTTTGATGTATTGCAATTTCTCGCGATA
AAGAGGAGTGGTACTGAAGTTCCAGTTCAACTCAATGGTCTTTCTGTGTT
GGAAGTTGCAAAGCTTGCTCATATTACTTTTCCTCGCCCAAGGTGGTGGC
CTCACCATTTTCAATCCAAATTATTCAACTTCCATGATTAA
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Coding sequence (CDS) from alignment at Ca_LG_5:37889614..37890204+

>Ca_14424.1_ICC4958_v2 ID=Ca_14424.1_ICC4958_v2; Name=Ca_14424.1; organism=Cicer arietinum; type=CDS; length=591bp; location=Sequence derived from: Ca_LG_5:37889614..37890204+ (Cicer arietinum
ATGAATGTTGAAGCACATGAAGACGACCCTTTTGGGTTTATTATTGAAGA
ATACAAAATATCCCTTTCCCAAGAGGAACTCTTACGTAACACTCCCTTAG
TCGGAGATTACTCCTACCAACCCCCCATTCTTCCTTCTCTTACCCCCCCT
CTCCCTCCCCCCGTTCCTTCTCTTACTCCTCTTCTTCATCATTGTACTCT
TAATCTCGCCTCTGATATTGACGATCACTTCCATTGCTTCGTTGATTTAA
CTCAGGATTCTGATTTAGGGTTTTCTCACCCTCATCCCAATCATAATGGT
ATCGAACAACCCCTCCAGGAGAACCACAATAATCTCCAAACTCAACAACC
TTCTCCAATGTCTGAACTAATCCGATTTCTTTTGGATAAGGCTACTCAAT
CTGGCAACGATCATTTTTCTGTTTTTGATGTATTGCAATTTCTCGCGATA
AAGAGGAGTGGTACTGAAGTTCCAGTTCAACTCAATGGTCTTTCTGTGTT
GGAAGTTGCAAAGCTTGCTCATATTACTTTTCCTCGCCCAAGGTGGTGGC
CTCACCATTTTCAATCCAAATTATTCAACTTCCATGATTAA
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