Ca_29793.1, Ca_29793.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_29793.1
Unique NameCa_29793.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length501
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold23232supercontigscaffold23232:43704..44204 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_29793Ca_29793_ICC4958_v2Cicer arietinumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_29793.1.cds1Ca_29793.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_29793.1.exon1Ca_29793.1.exon1_ICC4958_v2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_29793.1_ICC4958_v2Ca_29793.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Ca_29793.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33879FAMILY NOT NAMEDcoord: 1..166
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 115..142
e-value: 0.00133291
score: 34.0669

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_29793.1_ICC4958_v2 ID=Ca_29793.1_ICC4958_v2; Name=Ca_29793.1; organism=Cicer arietinum; type=mRNA; length=501bp
ATGAAGGTTCATCCTGTTCCGAGAAAGCGCAACATCACAATCCAATTCGG
CACCAACGGCGGTAACACCGCTTCGGAGGCTCAAGCTCTGTTGGGAATCT
CTGGGAAGAAGCTACGGCGTCTCCCACACGTTTTCAGCCGCGTGTTGGAG
CTTCCTTTTCGATCAGACGCGGACGTGGCGGTGGAGGAGGCTCCTGACTG
TTTCCGTTTCGTGGCGGAGACGGAGGGAATCGGCGAGGTGAGGACTCATA
CGGTGGAGATCCATCCCGGCGTGACGAAGATCGTGGTGAGAGATGGTGAA
TCGTTGGAATTATCGCTTGATCAGTTAGAGCTTGATATGTGGAGGTTCCG
TTTGCCGGATTCGACGATGCCGGAGCTTGCTAGTGCGGTGTTTGTTGACG
GGGAACTTATAGTCACGGTGCCGAAGGGACATGATCTGCAAAATGTTGAG
GGTGGTGATAGTGATAGAGATATGGGTGGTAGACTTGTTCTTGTACAGTG
A
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protein sequence of Ca_29793.1_ICC4958_v2

>Ca_29793.1_ICC4958_v2 ID=Ca_29793.1_ICC4958_v2; Name=Ca_29793.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=166bp
MKVHPVPRKRNITIQFGTNGGNTASEAQALLGISGKKLRRLPHVFSRVLE
LPFRSDADVAVEEAPDCFRFVAETEGIGEVRTHTVEIHPGVTKIVVRDGE
SLELSLDQLELDMWRFRLPDSTMPELASAVFVDGELIVTVPKGHDLQNVE
GGDSDRDMGGRLVLVQ
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mRNA from alignment at scaffold23232:43704..44204-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_29793.1_ICC4958_v2 ID=Ca_29793.1_ICC4958_v2; Name=Ca_29793.1; organism=Cicer arietinum; type=mRNA; length=501bp; location=Sequence derived from: scaffold23232:43704..44204- (Cicer arietinum
ATGAAGGTTCATCCTGTTCCGAGAAAGCGCAACATCACAATCCAATTCGG
CACCAACGGCGGTAACACCGCTTCGGAGGCTCAAGCTCTGTTGGGAATCT
CTGGGAAGAAGCTACGGCGTCTCCCACACGTTTTCAGCCGCGTGTTGGAG
CTTCCTTTTCGATCAGACGCGGACGTGGCGGTGGAGGAGGCTCCTGACTG
TTTCCGTTTCGTGGCGGAGACGGAGGGAATCGGCGAGGTGAGGACTCATA
CGGTGGAGATCCATCCCGGCGTGACGAAGATCGTGGTGAGAGATGGTGAA
TCGTTGGAATTATCGCTTGATCAGTTAGAGCTTGATATGTGGAGGTTCCG
TTTGCCGGATTCGACGATGCCGGAGCTTGCTAGTGCGGTGTTTGTTGACG
GGGAACTTATAGTCACGGTGCCGAAGGGACATGATCTGCAAAATGTTGAG
GGTGGTGATAGTGATAGAGATATGGGTGGTAGACTTGTTCTTGTACAGTG
A
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Coding sequence (CDS) from alignment at scaffold23232:43704..44204-

>Ca_29793.1_ICC4958_v2 ID=Ca_29793.1_ICC4958_v2; Name=Ca_29793.1; organism=Cicer arietinum; type=CDS; length=501bp; location=Sequence derived from: scaffold23232:43704..44204- (Cicer arietinum
ATGAAGGTTCATCCTGTTCCGAGAAAGCGCAACATCACAATCCAATTCGG
CACCAACGGCGGTAACACCGCTTCGGAGGCTCAAGCTCTGTTGGGAATCT
CTGGGAAGAAGCTACGGCGTCTCCCACACGTTTTCAGCCGCGTGTTGGAG
CTTCCTTTTCGATCAGACGCGGACGTGGCGGTGGAGGAGGCTCCTGACTG
TTTCCGTTTCGTGGCGGAGACGGAGGGAATCGGCGAGGTGAGGACTCATA
CGGTGGAGATCCATCCCGGCGTGACGAAGATCGTGGTGAGAGATGGTGAA
TCGTTGGAATTATCGCTTGATCAGTTAGAGCTTGATATGTGGAGGTTCCG
TTTGCCGGATTCGACGATGCCGGAGCTTGCTAGTGCGGTGTTTGTTGACG
GGGAACTTATAGTCACGGTGCCGAAGGGACATGATCTGCAAAATGTTGAG
GGTGGTGATAGTGATAGAGATATGGGTGGTAGACTTGTTCTTGTACAGTG
A
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