Ca_29798.1, Ca_29798.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_29798.1
Unique NameCa_29798.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length1206
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold23232supercontigscaffold23232:32366..33571 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_29798Ca_29798_ICC4958_v2Cicer arietinumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_29798.1.cds2Ca_29798.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_29798.1.cds1Ca_29798.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_29798.1.exon2Ca_29798.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_29798.1.exon1Ca_29798.1.exon1_ICC4958_v2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_29798.1_ICC4958_v2Ca_29798.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
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BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA34_GOSHI (Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 5.459e-103
Identity = 169/263 (64.26%), Postives = 204/263 (77.57%), Query Frame = 1 
Query:    1 MNQEQPRRHQ------ADQDPIKYGDVLPVSGDLAQKPIAPEDAAMMQSAESRVLGQTQPGGVASVMQSAATRNEQAGIVGHRDVTDVTCDRGVTVTETQVPGRRIVTESIGGQVVGQFVEXXXXXXXXXXXXXESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNNXXXXXXXXXXXXXXXXXXRLNESVN 771
            M+Q QPRR Q       +Q+PIKYGDV  VSG+LA KPIAP+DAAMMQ+AE++VLGQTQ GG A+VMQ+AATRNEQ G+VGH D+TD+  ++GVT+ ET V GRRI+TE++ GQVVGQ+V+ TPV   Q GVV ++A+TIGEALEATA T GDKPV+QSDA+A+QAAEVRATG NVI PGGLA+ AQSAA++NA   RDE+KIK+  VL+GATAKLPADKA TRQDA GV SAE+RNN                  RLNE+VN
Sbjct:    1 MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQKGGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYVQATPVMTSQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNVIIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELRNNPNVATHPGGVAASMAAAARLNENVN 263
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BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA31_ARATH (Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.535e-93
Identity = 151/258 (58.53%), Postives = 182/258 (70.54%), Query Frame = 1 
Query:    7 QEQPRRHQADQDPIKYGDVLPVSGDLAQKPIAPEDAAMMQSAESRVLGQTQPGGVASVMQSAATRNEQAGIVGHRDVTDVTCDRGVTVTETQVPGRRIVTESIGGQVVGQFVE------XXXXXXXXXXXXXESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNNXXXXXXXXXXXXXXXXXXRLNE 762
            +EQP+R    Q+P+ YGDV  VSG+LA KPIAPEDA MMQ+AE+RV G TQ GG A+VMQSAAT N++ G V   D TD+  +RGVTV +T VPG R+ TE +GGQVVGQ+VE         ++    G+  +SA+TIGEALEAT  T G+KPV+QSDA+AIQAAEVRA G NVI PGG+A+ AQSAA++NA   RDEDKIK+ DVL+GAT KL ADKA TRQDA GV SAE+RNN                  RLNE
Sbjct:    4 EEQPKR---PQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQSAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATAAAMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNE 258
[Close]
BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA32_ARATH (Late embryogenesis abundant protein 32 OS=Arabidopsis thaliana OX=3702 GN=ECP31 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.807e-83
Identity = 143/259 (55.21%), Postives = 172/259 (66.41%), Query Frame = 1 
Query:    1 MNQEQPRRHQADQDPIKYGDVLPVSGDLAQKPIAPEDAAMMQSAESRVLGQTQPGGVASVMQSAATRNEQAGIVGHRDVTDVTCDRGVTVTETQVPGRRIVTESIGGQVVGQFVE--XXXXXXXXXXXXXESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNNXXXXXXXXXXXXXXXXXXRLNESVN 771
            M+QEQPRR    ++P+KYGDV  VSG+LA KPIAPEDA MMQSAE+ V G TQ GG A+VMQSAAT N + G V   D T++  +RG TV +T VP   + TE +GGQVVGQ VE               +S +TIGEALEAT  T G+KPV+QSDA+AIQAAE+RA+G NVI   G+A+ AQSAA +NA   RDE KIK+ DVL+GA  KL AD+A TR+DA GV SAEMRNN                  RLNE V+
Sbjct:    1 MSQEQPRR---PREPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGPAAVMQSAATTNIRGGFVHPDDKTELVAERGATVEQT-VPAATVTTEFVGGQVVGQHVEPRRVVAAARTDEEALQSTITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAGVAASAQSAADHNATVDRDERKIKLRDVLTGAAGKLSADRAVTREDAEGVVSAEMRNNPKLCTHPGGVAASLTVAARLNERVD 255
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BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA47_ARATH (Late embryogenesis abundant protein 47 OS=Arabidopsis thaliana OX=3702 GN=At5g27980 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.430e-34
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:  385 ESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNN 696
            E  +TIGEALEA   T G+KPVE SDA+AIQAAEVRATG   I PGG+A+ AQSAA+ NA    D+ K  + DVL+GA++KLP+DKAATR+DA GV  AEMRN+
Sbjct:   65 EGTITIGEALEAAVLTAGNKPVEWSDAAAIQAAEVRATGRTNIMPGGVAASAQSAATLNARIGSDDTKTTLADVLTGASSKLPSDKAATRKDAEGVTGAEMRND 168
[Close]
BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA3_ARATH (Late embryogenesis abundant protein 3 OS=Arabidopsis thaliana OX=3702 GN=At1g03120 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.036e-23
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1 
Query:  394 LTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNNXXXXXXXXXXXXXXXXXXRLNESV 768
            +TIGEALEATA ++GDKPV++ DA+AIQAAE RATG +   PGGLA  AQ+AA+ N     +EDK+ I D+L+ A  +LP DK  T +DA  V  AE+R++                  RLN+ +
Sbjct:   58 VTIGEALEATALSLGDKPVDRRDAAAIQAAETRATGESKGRPGGLAVAAQAAATTNEQTVSEEDKVNIADILTDAAERLPGDKVVTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGARLNQQL 182
[Close]
BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA49_ARATH (Late embryogenesis abundant protein 49 OS=Arabidopsis thaliana OX=3702 GN=At5g53260 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.573e-13
Identity = 47/154 (30.52%), Postives = 81/154 (52.60%), Query Frame = 1 
Query:  235 VTDVTCDRGVTVTETQVPGRRIVTESIGGQVVGQFVEXXXXXXXXXXXXXESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRNN 696
            VT+++ +   +V+++  PG             GQFV PT         +   + T+ EAL+A +  VG KPVE +D +AI+  E RA G ++ + GG+ ++A  A + N    +D +K  +GDV++    K+  D+  T +DA  V  AE+ ++
Sbjct:   10 VTNISVEEHFSVSQSS-PG-------------GQFVGPTEEISTAAEALIGRSTTLTEALKAASMNVGHKPVETTDVAAIKEVETRAIGGDIESEGGVTAVASKAVARNQKIGKDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHS 149
[Close]
BLAST of Ca_29798.1 vs. DB:Swiss
Match: LEA50_ARATH (Late embryogenesis abundant protein 50 OS=Arabidopsis thaliana OX=3702 GN=At5g53270 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.903e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:  397 TIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIGDVLSGATAKLPADKAATRQDAAGVASAEMRN 693
            T+ EAL+A A  VG KPVE +D +AI+  E RA G ++ + GG+ ++A  A + N     D +K  +GDV++    K+  D+  T +DA  V  AE+ +
Sbjct:   31 TLTEALKAAAINVGRKPVETTDLAAIKEVEARAIGGDIESDGGVTAVASKAVARNQKIGEDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNH 129
The following BLAST results are available for this feature:
BLAST of Ca_29798.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
LEA34_GOSHI5.459e-10364.26Late embryogenesis abundant protein D-34 OS=Gossyp... [more]
LEA31_ARATH2.535e-9358.53Late embryogenesis abundant protein 31 OS=Arabidop... [more]
LEA32_ARATH2.807e-8355.21Late embryogenesis abundant protein 32 OS=Arabidop... [more]
LEA47_ARATH3.430e-3463.46Late embryogenesis abundant protein 47 OS=Arabidop... [more]
LEA3_ARATH2.036e-2346.40Late embryogenesis abundant protein 3 OS=Arabidops... [more]
LEA49_ARATH3.573e-1330.52Late embryogenesis abundant protein 49 OS=Arabidop... [more]
LEA50_ARATH4.903e-1237.37Late embryogenesis abundant protein 50 OS=Arabidop... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..232
NoneNo IPR availableCOILSCoilCoilcoord: 251..260
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR31174SEED MATURATION FAMILY PROTEINcoord: 1..254
NoneNo IPR availablePANTHERPTHR31174:SF23LATE EMBRYOGENESIS ABUNDANT PROTEIN 31-RELATEDcoord: 1..254
IPR007011Late embryogenesis abundant protein, SMP subgroupPFAMPF04927SMPcoord: 197..233
e-value: 2.1E-11
score: 44.1
coord: 133..189
e-value: 4.7E-22
score: 78.2
coord: 16..71
e-value: 9.3E-22
score: 77.3

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_29798.1_ICC4958_v2 ID=Ca_29798.1_ICC4958_v2; Name=Ca_29798.1; organism=Cicer arietinum; type=mRNA; length=1206bp
ATGAATCAGGAACAACCAAGGCGTCACCAAGCCGACCAAGATCCAATCAA
ATACGGCGATGTTTTACCCGTCTCCGGCGACCTTGCACAGAAGCCCATTG
CGCCGGAAGACGCTGCCATGATGCAGAGTGCGGAGAGTCGAGTGTTGGGT
CAGACCCAACCCGGCGGAGTAGCGTCTGTCATGCAATCAGCCGCCACTCG
GAATGAGCAGGCTGGAATCGTTGGTCACCGTGACGTTACTGATGTCACCT
GCGATCGTGGCGTCACCGTCACAGAAACTCAAGTCCCAGGAAGACGCATA
GTAACCGAATCAATCGGTGGACAGGTTCTCAACTTGACTGTTAATTGCGT
TTACCGTGTTTTAATTACCGTTTTTAACCTCAAGATTTCATAAGAGTCTA
TTTGTTATCATTTATTTTTAAAAATTCGTTTGGTAATACTTTCTGAAAAA
TTAGAATAAAAAAATAATCTAAAAAACTAATTTAAGTAAGAAATCATTTT
AAATAGATTTTTATAAAAATAATTTTTATAATTATGTATTGAAAATAATT
TTCACTATTTTTCTAAAAAATAGTCTAAAAGTTTTAACGAGTTTCTAATT
AGAATTTGAAAATAATGTAAAATGAAAATTTATAACTGAAATAAATAAAT
ATAATATAACTATTTTTTTCAAAAAAAAAAAATCACTTTGTTTTATTTAT
TTTATAATTTGTAACTGTGAGCTCTAACTGTATTTCGAATTTTGAAGGTT
GTGGGACAATTTGTTGAGCCGACCCCGGTTCAGGGTGGGCAAACCGGTGT
GGTCGGAGAGAGTGCCTTAACCATAGGGGAAGCACTGGAGGCGACGGCCC
ACACTGTGGGTGACAAGCCGGTGGAACAGAGTGACGCTTCTGCAATACAA
GCAGCGGAGGTAAGAGCTACAGGGTGTAATGTTATAACGCCTGGAGGGTT
GGCTTCAATGGCTCAATCCGCGGCGTCTTACAATGCTGACTGTCAGCGTG
ACGAGGATAAGATCAAGATAGGCGATGTTCTGTCAGGTGCCACCGCAAAG
TTGCCAGCAGACAAGGCGGCGACAAGGCAAGATGCTGCAGGGGTGGCGAG
TGCAGAGATGAGGAACAACCCTGATGCTACTGCTACTCCTGGTGGTGTTG
CTGCTTCTGTGGCTGCGGCCGCTAGGCTCAATGAAAGCGTCAATAATGTA
ATGTAG
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protein sequence of Ca_29798.1_ICC4958_v2

>Ca_29798.1_ICC4958_v2 ID=Ca_29798.1_ICC4958_v2; Name=Ca_29798.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=260bp
MNQEQPRRHQADQDPIKYGDVLPVSGDLAQKPIAPEDAAMMQSAESRVLG
QTQPGGVASVMQSAATRNEQAGIVGHRDVTDVTCDRGVTVTETQVPGRRI
VTESIGGQVVGQFVEPTPVQGGQTGVVGESALTIGEALEATAHTVGDKPV
EQSDASAIQAAEVRATGCNVITPGGLASMAQSAASYNADCQRDEDKIKIG
DVLSGATAKLPADKAATRQDAAGVASAEMRNNXXXXXXXXXXXXXXXXXX
RLNESVNNVM
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mRNA from alignment at scaffold23232:32366..33571-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_29798.1_ICC4958_v2 ID=Ca_29798.1_ICC4958_v2; Name=Ca_29798.1; organism=Cicer arietinum; type=mRNA; length=1206bp; location=Sequence derived from: scaffold23232:32366..33571- (Cicer arietinum
ATGAATCAGGAACAACCAAGGCGTCACCAAGCCGACCAAGATCCAATCAA
ATACGGCGATGTTTTACCCGTCTCCGGCGACCTTGCACAGAAGCCCATTG
CGCCGGAAGACGCTGCCATGATGCAGAGTGCGGAGAGTCGAGTGTTGGGT
CAGACCCAACCCGGCGGAGTAGCGTCTGTCATGCAATCAGCCGCCACTCG
GAATGAGCAGGCTGGAATCGTTGGTCACCGTGACGTTACTGATGTCACCT
GCGATCGTGGCGTCACCGTCACAGAAACTCAAGTCCCAGGAAGACGCATA
GTAACCGAATCAATCGGTGGACAGGTTCTCAACTTGACTGTTAATTGCGT
TTACCGTGTTTTAATTACCGTTTTTAACCTCAAGATTTCATAAGAGTCTA
TTTGTTATCATTTATTTTTAAAAATTCGTTTGGTAATACTTTCTGAAAAA
TTAGAATAAAAAAATAATCTAAAAAACTAATTTAAGTAAGAAATCATTTT
AAATAGATTTTTATAAAAATAATTTTTATAATTATGTATTGAAAATAATT
TTCACTATTTTTCTAAAAAATAGTCTAAAAGTTTTAACGAGTTTCTAATT
AGAATTTGAAAATAATGTAAAATGAAAATTTATAACTGAAATAAATAAAT
ATAATATAACTATTTTTTTCAAAAAAAAAAAATCACTTTGTTTTATTTAT
TTTATAATTTGTAACTGTGAGCTCTAACTGTATTTCGAATTTTGAAGGTT
GTGGGACAATTTGTTGAGCCGACCCCGGTTCAGGGTGGGCAAACCGGTGT
GGTCGGAGAGAGTGCCTTAACCATAGGGGAAGCACTGGAGGCGACGGCCC
ACACTGTGGGTGACAAGCCGGTGGAACAGAGTGACGCTTCTGCAATACAA
GCAGCGGAGGTAAGAGCTACAGGGTGTAATGTTATAACGCCTGGAGGGTT
GGCTTCAATGGCTCAATCCGCGGCGTCTTACAATGCTGACTGTCAGCGTG
ACGAGGATAAGATCAAGATAGGCGATGTTCTGTCAGGTGCCACCGCAAAG
TTGCCAGCAGACAAGGCGGCGACAAGGCAAGATGCTGCAGGGGTGGCGAG
TGCAGAGATGAGGAACAACCCTGATGCTACTGCTACTCCTGGTGGTGTTG
CTGCTTCTGTGGCTGCGGCCGCTAGGCTCAATGAAAGCGTCAATAATGTA
ATGTAG
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Coding sequence (CDS) from alignment at scaffold23232:32366..33571-

>Ca_29798.1_ICC4958_v2 ID=Ca_29798.1_ICC4958_v2; Name=Ca_29798.1; organism=Cicer arietinum; type=CDS; length=783bp; location=Sequence derived from: scaffold23232:32366..33571- (Cicer arietinum
ATGAATCAGGAACAACCAAGGCGTCACCAAGCCGACCAAGATCCAATCAA
ATACGGCGATGTTTTACCCGTCTCCGGCGACCTTGCACAGAAGCCCATTG
CGCCGGAAGACGCTGCCATGATGCAGAGTGCGGAGAGTCGAGTGTTGGGT
CAGACCCAACCCGGCGGAGTAGCGTCTGTCATGCAATCAGCCGCCACTCG
GAATGAGCAGGCTGGAATCGTTGGTCACCGTGACGTTACTGATGTCACCT
GCGATCGTGGCGTCACCGTCACAGAAACTCAAGTCCCAGGAAGACGCATA
GTAACCGAATCAATCGGTGGACAGGTTGTGGGACAATTTGTTGAGCCGAC
CCCGGTTCAGGGTGGGCAAACCGGTGTGGTCGGAGAGAGTGCCTTAACCA
TAGGGGAAGCACTGGAGGCGACGGCCCACACTGTGGGTGACAAGCCGGTG
GAACAGAGTGACGCTTCTGCAATACAAGCAGCGGAGGTAAGAGCTACAGG
GTGTAATGTTATAACGCCTGGAGGGTTGGCTTCAATGGCTCAATCCGCGG
CGTCTTACAATGCTGACTGTCAGCGTGACGAGGATAAGATCAAGATAGGC
GATGTTCTGTCAGGTGCCACCGCAAAGTTGCCAGCAGACAAGGCGGCGAC
AAGGCAAGATGCTGCAGGGGTGGCGAGTGCAGAGATGAGGAACAACCCTG
ATGCTACTGCTACTCCTGGTGGTGTTGCTGCTTCTGTGGCTGCGGCCGCT
AGGCTCAATGAAAGCGTCAATAATGTAATGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007011LEA_SMP_dom