Cr_13026.1, Cr_13026.1_PI489777_v1 (mRNA) Cicer reticulatum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At2g22425 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.804e-26 Identity = 54/75 (72.00%), Postives = 58/75 (77.33%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWLDPSEVEKH 225 MDWQGQ L E LMQ +L+ V+A GY S TM+LIYAGGVVLTTLVTVPNWPFYN HPLKWLDPSE EKH Sbjct: 1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYNLHPLKWLDPSEAEKH 75
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_BOVIN (Signal peptidase complex subunit 1 OS=Bos taurus OX=9913 GN=SPCS1 PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.586e-11 Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWL 201 MD++GQ LAE + Q ++L A++ F GYL + I G + L+T+P WP Y RHPLKWL Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYLAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWL 78
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_PONAB (Signal peptidase complex subunit 1 OS=Pongo abelii OX=9601 GN=SPCS1 PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 5.409e-11 Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWLDPSE 213 MD++GQ LAE + Q ++L A++ F GY+ + I G + L+T+P WP Y RHPLKWL E Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLPVQE 82
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_HUMAN (Signal peptidase complex subunit 1 OS=Homo sapiens OX=9606 GN=SPCS1 PE=1 SV=4) HSP 1 Score: 57.3806 bits (137), Expect = 5.409e-11 Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWLDPSE 213 MD++GQ LAE + Q ++L A++ F GY+ + I G + L+T+P WP Y RHPLKWL E Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLPVQE 82
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_PIG (Signal peptidase complex subunit 1 OS=Sus scrofa OX=9823 GN=SPCS1 PE=3 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 9.489e-11 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWL 201 MD++GQ LAE + Q ++L A++ F GY+ + I G + L+T+P WP Y RHPLKWL Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWL 78
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_MOUSE (Signal peptidase complex subunit 1 OS=Mus musculus OX=10090 GN=Spcs1 PE=2 SV=3) HSP 1 Score: 56.6102 bits (135), Expect = 3.711e-10 Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWL 201 MD++GQ LAE + Q ++L A++ F GY+ + I G + L+T+P WP Y RHPLKWL Sbjct: 71 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWL 137
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_DICDI (Signal peptidase complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=spcs1 PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 1.469e-8 Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWLDP 207 MD++GQ LAE + Q+ ++ F VI + G++ + A G L+ ++ +PNW Y +HPL W P Sbjct: 1 MDFEGQKLAEYIYQYTIIIFGVIGWIIGFIKQDFSITFYSVALGTFLSLILCLPNWKIYCQHPLSWQKP 69
BLAST of Cr_13026.1 vs. DB:Swiss
Match: SPCS1_DROME (Signal peptidase complex subunit 1 OS=Drosophila melanogaster OX=7227 GN=Spase12 PE=1 SV=2) HSP 1 Score: 46.595 bits (109), Expect = 7.064e-7 Identity = 24/73 (32.88%), Postives = 40/73 (54.79%), Query Frame = 1 Query: 1 MDWQGQNLAENLMQFMLLAFAVIAFGTGYLIASLNTMILIYAGGXXXXXXXXXPNWPFYNRHPLKWLDPSEVE 219 MD+ GQ AE +F++ F ++ G + + + I G VL++L+T+P WP Y R+ LKW P + + Sbjct: 8 MDFAGQGKAERWSRFIITFFGIVGLVYGAFVQQFSQTVYILGAGFVLSSLITIPPWPLYRRNALKWQKPIDTD 80 The following BLAST results are available for this feature:
BLAST of Cr_13026.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot) Total hits: 8
InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cr_13026.1_PI489777_v1 ID=Cr_13026.1_PI489777_v1; Name=Cr_13026.1; organism=Cicer reticulatum; type=mRNA; length=1520bpback to top protein sequence of Cr_13026.1_PI489777_v1 >Cr_13026.1_PI489777_v1 ID=Cr_13026.1_PI489777_v1; Name=Cr_13026.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=98bpback to top mRNA from alignment at Cr_LG_5:22580947..22582466+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Cr_13026.1_PI489777_v1 ID=Cr_13026.1_PI489777_v1; Name=Cr_13026.1; organism=Cicer reticulatum; type=mRNA; length=1520bp; location=Sequence derived from: Cr_LG_5:22580947..22582466+ (Cicer reticulatumback to top Coding sequence (CDS) from alignment at Cr_LG_5:22580947..22582466+ >Cr_13026.1_PI489777_v1 ID=Cr_13026.1_PI489777_v1; Name=Cr_13026.1; organism=Cicer reticulatum; type=CDS; length=297bp; location=Sequence derived from: Cr_LG_5:22580947..22582466+ (Cicer reticulatumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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