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Genome Overview
| Analysis Name | Vicia faba cv. Tiffany genome v1.0 |
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| Method | PacBio Hifi and Hi-C (Assembly hifiasm v0.11-r302) |
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| Source | Faba Bean Genome Consortium |
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| Date performed | 2023-05-02 |
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This assembly and annotation was downloaded from the Faba Bean Genome Consortium and the citation is: Jayakodi M, Golicz AA, Kreplak J, Fechete LI, Angra D, Bednář P, Bornhofen E, Zhang H, Boussageon R, Kaur S, Cheung K, Čížková J, Gundlach H, Hallab A, Imbert B, Keeble-Gagnère G, Koblížková A, Kobrlová L, Krejčí P, Mouritzen TW, Neumann P, Nadzieja M, Nielsen LK, Novák P, Orabi J, Padmarasu S, Robertson-Shersby-Harvie T, Robledillo LÁ, Schiemann A, Tanskanen J, Törönen P, Warsame AO, Wittenberg AHJ, Himmelbach A, Aubert G, Courty PE, Doležel J, Holm LU, Janss LL, Khazaei H, Macas J, Mascher M, Smýkal P, Snowdon RJ, Stein N, Stoddard FL, Stougaard J, Tayeh N, Torres AM, Usadel B, Schubert I, O'Sullivan DM, Schulman AH, Andersen SU. The giant diploid faba genome unlocks variation in a global protein crop. Nature. 2023 Mar 08.
About the assembly:
| Number of scaffolds |
1,971 |
| Total size |
11.37 Gb |
| N50 |
1,527,935,595 bp |
| Annotation BUSCO score (embryophyta_odb10) |
91.6% |
Assembly
The Vicia faba Tiffany genome v1.0 assembly file is available in FASTA format.
Downloads
| Chromosomes (FASTA file) |
Vf_Tiffany_v1.0.fasta.gz |
Gene Prediction
The Vicia faba Tiffany v1.0 genome gene prediction files are available in FASTA and GFF3 formats.
Downloads
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