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Genome Overview
| Analysis Name | Pisum sativum cv. Zhongwan6 genome v1.0 |
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| Method | Illumina NovaSeq, HiSeq and PacBio Sequel (Assembly with Canu and Pilon) |
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| Source | PeaZW6 assembly |
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| Date performed | 2023-05-02 |
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Assembly
The Pisum sativum Zhongwan6 genome v1.0 assembly files are available in FASTA format.
Downloads
Gene Prediction
The Pisum sativum Zhongwan6 v1.0 genome gene prediction files are available in FASTA and GFF3 formats.
Downloads
Homology
Homology of the Pisum sativum Zhongwan6 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-9 was used for the NCBI nr (Release 2021-09) and 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2021-09), and UniProtKB/TrEMBL (Release 2021-09) databases. The best hit reports are available for download in Excel format.
Protein Homologs
| G.arboreum Zhongwan6 genome v1.0 proteins with arabidopsis (Araport11) homologs (EXCEL file) |
ps_zw6_v1_vs_tair.xlsx.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins with arabidopsis (Araport11) (FASTA file) |
ps_zw6_v1_vs_tair_hit.fasta.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins without arabidopsis (Araport11) (FASTA file) |
ps_zw6_v1_vs_tair_noHit.fasta.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins with SwissProt homologs (EXCEL file) |
ps_zw6_v1_vs_swissprot.xlsx.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins with SwissProt (FASTA file) |
ps_zw6_v1_vs_swissprot_hit.fasta.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins without SwissProt (FASTA file) |
ps_zw6_v1_vs_swissprot_noHit.fasta.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins with TrEMBL homologs (EXCEL file) |
ps_zw6_v1_vs_trembl.xlsx.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins with TrEMBL (FASTA file) |
ps_zw6_v1_vs_trembl_hit.fasta.gz |
| G.arboreum Zhongwan6 genome v1.0 proteins without TrEMBL (FASTA file) |
ps_zw6_v1_vs_trembl_noHit.fasta.gz |
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