Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0

Genome Overview
Analysis NameVigna unguiculata subsp. sesquipedalis line A147 genome v1.0
MethodPacBio HiFi, Hi-C, Illumina (assembled with Canu, HifiAsm)
SourceHuazhong Agriculture University
Date performed2023-06-12

The genome of elite breeding line A147 (also known as Xiabao II) was sequenced and assembled as outlined in Pan L, Liu M, Kang Y, Mei X, Hu G, Bao C, Zheng Y, Zhao H, Chen C, Wang N. Comprehensive genomic analyses of Vigna unguiculata provide insights into population differentiation and the genetic basis of key agricultural traits. Plant biotechnology journal. 2023 Mar 25.

About the assembly:

Number of scaffolds 2,033
Total size  594 Mb
N50 47,781,015 bp
Assembly BUSCO score (embryophyta_odb10) 97.9%
Annotation BUSCO score (embryophyta_odb10) 91.2%
Functional Analysis

Functional annotation files for the Vigna unguiculata subsp. sesquipedalis A147 genome v1.0 are available for download below. The Vigna unguiculata subsp. sesquipedalis A147 genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).

Downloads

GO assignments from InterProScan Vu_A147_v1_genes2GO.xlsx.gz
IPR assignments from InterProScan Vu_A147_v1_genes2IPR.xlsx.gz
Proteins mapped to KEGG Orthologs Vu_A147_v1_KEGG-orthologis.xlsx.gz
Proteins mapped to KEGG Pathways Vu_A147_v1_KEGG-pathways.xlsx.gz

 

Assembly

The Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0 assembly file is available in FASTA format.

Downloads

Chromosomes and scaffolds (FASTA file) Vunguiculata_A147_v1.0.fasta.gz

 

Gene Prediction

The Vigna unguiculata subsp. sesquipedalis line A147 v1.0 genome gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences  (FASTA file) Vunguiculata_A147_v1.0.proteins.fasta.gz
CDS  (FASTA file) Vunguiculata_A147_v1.0.cds.fasta.gz
Genes (GFF3 file) Vunguiculata_A147_v1.0.genes.gff3.gz

 

Homology

Homology of the Vigna unguiculata subsp. sesquipedalis A147 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6  for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2021-09), and UniProtKB/TrEMBL (Release 2021-09) databases. The best hit reports are available for download in Excel format. 

Protein Homologs

Vigna unguiculata A147 genome v1.0 proteins with arabidopsis (Araport11) homologs (EXCEL file) Vu_A147_v1_vs_tair.xlsx.gz
Vigna unguiculata A147 genome v1.0 proteins with arabidopsis (Araport11) (FASTA file) Vu_A147_v1_vs_tair_hit.fasta.gz
Vigna unguiculata A147 genome v1.0 proteins without arabidopsis (Araport11) (FASTA file) Vu_A147_v1_vs_tair_noHit.fasta.gz
Vigna unguiculata A147 genome v1.0 proteins with SwissProt homologs (EXCEL file) Vu_A147_v1_vs_swissprot.xlsx.gz
Vigna unguiculata A147 genome v1.0 proteins with SwissProt (FASTA file) Vu_A147_v1_vs_swissprot_hit.fasta.gz
Vigna unguiculata A147 genome v1.0 proteins without SwissProt (FASTA file) Vu_A147_v1_vs_swissprot_noHit.fasta.gz
Vigna unguiculata A147 genome v1.0 proteins with TrEMBL homologs (EXCEL file) Vu_A147_v1_vs_trembl.xlsx.gz
Vigna unguiculata A147 genome v1.0 proteins with TrEMBL (FASTA file) Vu_A147_v1_vs_trembl_hit.fasta.gz
Vigna unguiculata A147 genome v1.0 proteins without TrEMBL (FASTA file) Vu_A147_v1_vs_trembl_noHit.fasta.gz