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Genome Overview
Analysis Name | Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0 |
Method | PacBio HiFi, Hi-C, Illumina (assembled with Canu, HifiAsm) |
Source | Huazhong Agriculture University |
Date performed | 2023-06-12 |
The genome of elite breeding line A147 (also known as Xiabao II) was sequenced and assembled as outlined in Pan L, Liu M, Kang Y, Mei X, Hu G, Bao C, Zheng Y, Zhao H, Chen C, Wang N. Comprehensive genomic analyses of Vigna unguiculata provide insights into population differentiation and the genetic basis of key agricultural traits. Plant biotechnology journal. 2023 Mar 25.
About the assembly:
Number of scaffolds |
2,033 |
Total size |
594 Mb |
N50 |
47,781,015 bp |
Assembly BUSCO score (embryophyta_odb10) |
97.9% |
Annotation BUSCO score (embryophyta_odb10) |
91.2% |
Assembly
The Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0 assembly file is available in FASTA format.
Downloads
Chromosomes and scaffolds (FASTA file) |
Vunguiculata_A147_v1.0.fasta.gz |
Gene Prediction
The Vigna unguiculata subsp. sesquipedalis line A147 v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
Homology
Homology of the Vigna unguiculata subsp. sesquipedalis A147 genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11), UniProtKB/SwissProt (Release 2021-09), and UniProtKB/TrEMBL (Release 2021-09) databases. The best hit reports are available for download in Excel format.
Protein Homologs
Vigna unguiculata A147 genome v1.0 proteins with arabidopsis (Araport11) homologs (EXCEL file) |
Vu_A147_v1_vs_tair.xlsx.gz |
Vigna unguiculata A147 genome v1.0 proteins with arabidopsis (Araport11) (FASTA file) |
Vu_A147_v1_vs_tair_hit.fasta.gz |
Vigna unguiculata A147 genome v1.0 proteins without arabidopsis (Araport11) (FASTA file) |
Vu_A147_v1_vs_tair_noHit.fasta.gz |
Vigna unguiculata A147 genome v1.0 proteins with SwissProt homologs (EXCEL file) |
Vu_A147_v1_vs_swissprot.xlsx.gz |
Vigna unguiculata A147 genome v1.0 proteins with SwissProt (FASTA file) |
Vu_A147_v1_vs_swissprot_hit.fasta.gz |
Vigna unguiculata A147 genome v1.0 proteins without SwissProt (FASTA file) |
Vu_A147_v1_vs_swissprot_noHit.fasta.gz |
Vigna unguiculata A147 genome v1.0 proteins with TrEMBL homologs (EXCEL file) |
Vu_A147_v1_vs_trembl.xlsx.gz |
Vigna unguiculata A147 genome v1.0 proteins with TrEMBL (FASTA file) |
Vu_A147_v1_vs_trembl_hit.fasta.gz |
Vigna unguiculata A147 genome v1.0 proteins without TrEMBL (FASTA file) |
Vu_A147_v1_vs_trembl_noHit.fasta.gz |
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