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Genome Overview
| Analysis Name | Cicer arietinum CDC Frontier NCBI RefSeq v1 |
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| Method | Illumina (Assembly with SOAPdenovo) |
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| Source | GCF_000331145.1 |
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| Date performed | 2024-01-04 |
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The genome was sequenced and assembled as outlined in Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature biotechnology. 2013 Mar; 31(3):240-6.
The RefSeq annotation was performed by NCBI.
About the assembly:
| Number of scaffolds |
7,127 |
| Total size |
531 Mb |
| N50 |
39,989,001 bp |
| Assembly BUSCO score (embryophyta_odb10) |
98.6% |
| Annotation BUSCO score (embryophyta_odb10) |
99.7% |
Functional Analysis
Functional annotation files for the Cicer arietinum CDC Frontier NCBI genome v1.0 are available for download below. The Cicer arietinum CDC Frontier NCBI genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
Assembly
The Cicer arietinum CDC frontier NCBI RefSeq v1.0 assembly files are available in GFF3 and FASTA format.
Downloads
| Chromosomes and scaffolds (FASTA file) |
Ca_CDCfrontier_NCBI_v1.0.fasta.gz |
Gene Prediction
The Cicer arietinum CDC frontier NCBI RefSeq v1.0 gene prediction files are available in GFF3 and FASTA format.
Downloads
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