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Genome Overview
| Analysis Name | Cicer arietinum cv. CDC Frontier genome v2.0 |
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| Method | HiSeqXTen, NextGen500 (Assembly with 3D-DNA, Juicebox Assembly Tools) |
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| Source | Legumepedia |
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| Date performed | 2024-06-26 |
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The genome was sequenced and assembled as outlined in Garg V, Dudchenko O, Wang J, Khan AW, Gupta S, Kaur P, Han K, Saxena RK, Kale SM, Pham M, Yu J. Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. Journal of advanced research. 2022 Dec 1;42:315-29.
About the assembly:
| Number of scaffolds |
6,448 |
| Total size |
530 Mb |
| N50 |
65,803,235 bp |
| Assembly BUSCO score (embryophyta_odb10) |
98.9% |
| Annotation BUSCO score (embryophyta_odb10) |
96.6% |
Functional Analysis
Functional annotation files for the Cicer arietinum cv. CDC Frontier genome v2.0 are available for download below. The C. arietinum cv. CDC Frontier genome v2.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
Assembly
The Cicer arietinum cv. CDC Frontier genome v2.0 assembly file is available in FASTA format.
Downloads
| Chromosomes and scaffolds (FASTA file) |
Ca_CDCfrontier_v2.0.fasta.gz |
Gene Prediction
The Cicer arietinum cv. CDC Frontier genome v2.0 gene prediction files are available in GFF3 and FASTA format.
Downloads
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