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Genome Overview
| Analysis Name | Vigna stipulacea acc. JP252948 genome v2.a1 |
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| Method | PacBio (Assembly with Canu v2.0) |
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| Source | VIGGS |
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| Date performed | 2024-06-27 |
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The genome was sequenced and assembled as outlined in Takahashi Y, Sakai H, Ariga H, Teramoto S, Shimada TL, Eun H, Muto C, Naito K, Tomooka N. Domesticating Vigna stipulacea: Chromosome-Level genome assembly reveals VsPSAT1 as a candidate gene decreasing hard-seededness. Frontiers in plant science. 2023; 14:1119625.
About the assembly:
| Number of scaffolds |
790 |
| Total size |
413 Mb |
| N50 |
34,378,316bp |
| Assembly BUSCO score (embryophyta_odb10) |
98.2% |
| Annotation BUSCO score (embryophyta_odb10) |
98.7% |
Functional Analysis
Functional annotation files for the Vigna stipulacea acc. JP252948 genome v1.0 are available for download below. The V. stipulacea acc. JP252948 genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
Assembly
The Vigna stipulacea acc. JP252948 genome v1.0 assembly file is available in FASTA format.
Downloads
| Chromosomes and scaffolds (FASTA file) |
Vst_JP252948_v2.0.fasta.gz |
Gene Prediction
The Vigna stipulacea acc. JP252948 genome v1.0 gene prediction files are available in GFF3 and FASTA format.
Downloads
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