Vigna angularis cv. Shumari genome v1.a1

Genome Overview
Analysis NameVigna angularis cv. Shumari genome v1.a1
MethodIllumina, PacBio (Assembly with Celera, Quiver)
SourceVIGGS
Date performed2024-06-27

The genome was sequenced and assembled as outlined in Sakai H, Naito K, Ogiso-Tanaka E, Takahashi Y, Iseki K, Muto C, Satou K, Teruya K, Shiroma A, Shimoji M, Hirano T, Itoh T, Kaga A, Tomooka N. The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome. Scientific reports. 2015 Nov 30; 5:16780.

About the assembly:

Number of scaffolds 2,261
Total size  522 Mb
N50 38,860,970 bp
Assembly BUSCO score (embryophyta_odb10) 97.6%
Annotation BUSCO score (embryophyta_odb10) 94.2%
Functional Analysis

Functional annotation files for the Vigna angularis cv. Shumari genome v1.a1 are available for download below. The V. angularis cv. Shumari genome v1.a1 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).

Downloads

GO assignments from InterProScan Va_Shumari_v1_genes2GO.xlsx.gz
IPR assignments from InterProScan Va_Shumari_v1_genes2IPR.xlsx.gz
Proteins mapped to KEGG Orthologs Va_Shumari_v1_KEGG-orthologis.xlsx.gz
Proteins mapped to KEGG Pathways Va_Shumari_v1_KEGG-pathways.xlsx.gz
Assembly

The Vigna angularis cv. Shumari genome v1.0 assembly file is available in FASTA format.

Downloads

Chromosomes and scaffolds (FASTA file) Va_Shumari_v1.0.fasta.gz
Gene Prediction

The Vigna angularis cv. Shumari genome v1.a1 gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences  (FASTA file) Va_Shumari_v1.a1.protein.fasta.gz
Transcript sequences  (FASTA file) Va_Shumari_v1.a1.transcript.fasta.gz
CDS  (FASTA file) Va_Shumari_v1.a1.cds.fasta.gz
Genes (GFF3 file) PCD-Va_Shumari_v1.a1.genes.gff3.gz
Homology

Homology of the Vigna angularis cv. Shumari genome v1.a1 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6  for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2024-03), and UniProtKB/TrEMBL (Release 2024-03) databases. The best hit reports are available for download in Excel format. 

Protein Homologs

V. angularis cv. Shumari genome v1.a1 proteins with arabidopsis (Araport11) homologs (EXCEL file) Va_Shumari_v1_vs_tair.xlsx.gz
V. angularis cv. Shumari genome v1.a1 proteins with arabidopsis (Araport11) (FASTA file) Va_Shumari_v1_vs_tair_hit.fasta.gz
V. angularis cv. Shumari genome v1.a1 proteins without arabidopsis (Araport11) (FASTA file) Va_Shumari_v1_vs_tair_noHit.fasta.gz
V. angularis cv. Shumari genome v1.a1 proteins with SwissProt homologs (EXCEL file) Va_Shumari_v1_vs_swissprot.xlsx.gz
V. angularis cv. Shumari genome v1.a1 proteins with SwissProt (FASTA file) Va_Shumari_v1_vs_swissprot_hit.fasta.gz
V. angularis cv. Shumari genome v1.a1 proteins without SwissProt (FASTA file) Va_Shumari_v1_vs_swissprot_noHit.fasta.gz
V. angularis cv. Shumari genome v1.a1 proteins with TrEMBL homologs (EXCEL file) Va_Shumari_v1_vs_trembl.xlsx.gz
V. angularis cv. Shumari genome v1.a1 proteins with TrEMBL (FASTA file) Va_Shumari_v1_vs_trembl_hit.fasta.gz
V. angularis cv. Shumari genome v1.a1 proteins without TrEMBL (FASTA file) Va_Shumari_v1_vs_trembl_noHit.fasta.gz