Cajanus cajan SM01 genome v1.0

Genome Overview
Analysis NameCajanus cajan SM01 genome v1.0
MethodPacBio Hifi (Assembly with Hifiasm v0.16.1)
SourceGWHEUBU00000000.1
Date performed2026-02-03

The genome was sequenced and assembled as outlined in Wang L, Jiang X, Jiao W, Mao J, Ye W, Cao Y, Chen Q, Song Q. Pangenome analysis provides insights into legume evolution and breeding. Nature Genetics. 2025 Jul 30.

About the assembly:

Number of scaffolds 38
Total size  761 Mb
N50 76,032,176 bp
Assembly BUSCO score (embryophyta_odb10) 98.6%
Annotation BUSCO score (embryophyta_odb10) 89.7%
Functional Analysis

Functional annotation files for the Cajanus cajan SM01 v1.0.a1 protein sequences are available for download below. Protein sequences were analyzed using InterProScan v5.72 to assign InterPro domains and Gene Ontology (GO) terms. Pathway analysis was performed using the KEGG Automatic Annotation Server (KAAS) v2.1.

Downloads

Gene Ontology (GO) annotations (InterProScan) Cc_SM01_v1.0.a1_genes2GO.xlsx.gz
InterPro domain annotations (InterProScan) Cc_SM01_v1.0.a1_genes2IPR.xlsx.gz
KEGG Ortholog (KO) assignments Cc_SM01_v1.0.a1_KEGG_orthologs.xlsx.gz
Assembly

The Cajanus cajan SM01 genome v1.0 assembly is available in FASTA format.

Downloads

Chromosomes and scaffolds (FASTA ) Cc_SM01_v1.0.fasta.gz
Gene Prediction

The Cajanus cajan SM01 genome v1.0.a1 gene models are available in GFF3 and FASTA formats.

Downloads

Protein sequences  (FASTA) Cc_SM01_v1.0.a1.proteins.fasta.gz
Coding sequences  (FASTA) Cc_SM01_v1.0.a1.cds.fasta.gz
Transcript sequences  (FASTA) Cc_SM01_v1.0.a1.transcripts.fasta.gz
Gene Models (GFF3) Cc_SM01_v1.0.a1.genes.gff3.gz
Homology

Homology of the Cajanus cajan SM01 v1.0.a1 protein sequences was determined by pairwise sequence comparison using the BLASTp algorithm against various protein databases. An E-value cutoff of 10-6 was applied for Arabidopsis thaliana (Araport11, 2022-09), UniProtKB/Swiss-Prot (Release date: 2026-01-28), and UniProtKB/TrEMBL (Release date: 2026-01-28) databases. The best-hit reports are available for download in Excel format.

Protein Homologs

C. cajan SM01 Araport11 homologs (EXCEL) C.cajan_SM01_v1.0.a1_Araport11_homology.xlsx
C. cajan SM01 with Araport11 matches (FASTA) C.cajan_SM01_v1.0.a1_Araport11_matches.fasta.gz
C. cajan SM01 without Araport11 matches (FASTA) C.cajan_SM01_v1.0.a1_Araport11_no_matches.fasta.gz
C. cajan SM01 SwissProt homologs (EXCEL) C.cajan_SM01_v1.0.a1_SwissProt_homology.xlsx.gz
C. cajan SM01 with Swiss-Prot matches (FASTA) C.cajan_SM01_v1.0.a1_SwissProt_matches.fasta.gz
C. cajan SM01 without Swiss-Prot matches (FASTA) C.cajan_SM01_v1.0.a1_SwissProt_no_matches.fasta.gz
C. cajan SM01 TrEMBL homologs (EXCEL) C.cajan_SM01_v1.0.a1_TrEMBL_homology.xlsx.gz
C. cajan SM01 with TrEMBL matches (FASTA) C.cajan_SM01_v1.0.a1_TrEMBL_matches.fasta.gz
C. cajan SM01 without TrEMBL matches (FASTA) C.cajan_SM01_v1.0.a1_TrEMBL_no_matches.fasta.gz