A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig041305Pisum_contig041305genetic_marker
Pisum_contig041306Pisum_contig041306genetic_marker
Pisum_contig041308Pisum_contig041308genetic_marker
Pisum_contig041310Pisum_contig041310genetic_marker
Pisum_contig041316Pisum_contig041316genetic_marker
Pisum_contig041319Pisum_contig041319genetic_marker
Pisum_contig057160Pisum_contig057160genetic_marker
Pisum_contig061167Pisum_contig061167genetic_marker
Pisum_contig129377Pisum_contig129377genetic_marker
Pisum_contig129386Pisum_contig129386genetic_marker
Pisum_contig021948Pisum_contig021948genetic_marker
Pisum_contig041293Pisum_contig041293genetic_marker
Pisum_contig041311Pisum_contig041311genetic_marker
Pisum_contig021918Pisum_contig021918genetic_marker
Pisum_contig021926Pisum_contig021926genetic_marker
Pisum_contig189836Pisum_contig189836genetic_marker
Pisum_contig041318Pisum_contig041318genetic_marker
Pisum_contig005441Pisum_contig005441genetic_marker
Pisum_contig005467Pisum_contig005467genetic_marker
Pisum_contig005469Pisum_contig005469genetic_marker
Pisum_contig005480Pisum_contig005480genetic_marker
Pisum_contig038929Pisum_contig038929genetic_marker
Pisum_contig019315Pisum_contig019315genetic_marker
Pisum_contig053614Pisum_contig053614genetic_marker
Pisum_contig061153Pisum_contig061153genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States