A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig131214Pisum_contig131214genetic_marker
Pisum_contig131216Pisum_contig131216genetic_marker
Pisum_contig131219Pisum_contig131219genetic_marker
Pisum_contig133998Pisum_contig133998genetic_marker
Pisum_contig134000Pisum_contig134000genetic_marker
Pisum_contig134001Pisum_contig134001genetic_marker
Pisum_contig136586Pisum_contig136586genetic_marker
Pisum_contig197221Pisum_contig197221genetic_marker
Pisum_contig200561Pisum_contig200561genetic_marker
Pisum_contig133999Pisum_contig133999genetic_marker
Pisum_contig131215Pisum_contig131215genetic_marker
Pisum_contig133992Pisum_contig133992genetic_marker
Pisum_contig170238Pisum_contig170238genetic_marker
Pisum_contig197222Pisum_contig197222genetic_marker
Pisum_contig036348Pisum_contig036348genetic_marker
Pisum_contig047951Pisum_contig047951genetic_marker
Pisum_contig047957Pisum_contig047957genetic_marker
Pisum_contig062708Pisum_contig062708genetic_marker
Pisum_contig066056Pisum_contig066056genetic_marker
Pisum_contig067488Pisum_contig067488genetic_marker
Pisum_contig100102Pisum_contig100102genetic_marker
Pisum_contig109802Pisum_contig109802genetic_marker
Pisum_contig111238Pisum_contig111238genetic_marker
Pisum_contig122034Pisum_contig122034genetic_marker
Pisum_contig122038Pisum_contig122038genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States