A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig161047Pisum_contig161047genetic_marker
Pisum_contig180014Pisum_contig180014genetic_marker
Pisum_contig106816Pisum_contig106816genetic_marker
Pisum_contig013869Pisum_contig013869genetic_marker
Pisum_contig016984Pisum_contig016984genetic_marker
Pisum_contig052723Pisum_contig052723genetic_marker
Pisum_contig074969Pisum_contig074969genetic_marker
Pisum_contig074985Pisum_contig074985genetic_marker
Pisum_contig080814Pisum_contig080814genetic_marker
Pisum_contig092500Pisum_contig092500genetic_marker
Pisum_contig097995Pisum_contig097995genetic_marker
Pisum_contig106819Pisum_contig106819genetic_marker
Pisum_contig122086Pisum_contig122086genetic_marker
Pisum_contig122092Pisum_contig122092genetic_marker
Pisum_contig128390Pisum_contig128390genetic_marker
Pisum_contig142447Pisum_contig142447genetic_marker
Pisum_contig146535Pisum_contig146535genetic_marker
Pisum_contig146539Pisum_contig146539genetic_marker
Pisum_contig149136Pisum_contig149136genetic_marker
Pisum_contig151548Pisum_contig151548genetic_marker
Pisum_contig167103Pisum_contig167103genetic_marker
Pisum_contig186992Pisum_contig186992genetic_marker
Pisum_contig192838Pisum_contig192838genetic_marker
Pisum_contig013905Pisum_contig013905genetic_marker
Pisum_contig053706Pisum_contig053706genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States