A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig128392Pisum_contig128392genetic_marker
Pisum_contig099727Pisum_contig099727genetic_marker
Pisum_contig021157Pisum_contig021157genetic_marker
Pisum_contig021161Pisum_contig021161genetic_marker
Pisum_contig026616Pisum_contig026616genetic_marker
Pisum_contig026617Pisum_contig026617genetic_marker
Pisum_contig140512Pisum_contig140512genetic_marker
Pisum_contig153193Pisum_contig153193genetic_marker
Pisum_contig021781Pisum_contig021781genetic_marker
Pisum_contig026619Pisum_contig026619genetic_marker
Pisum_contig130892Pisum_contig130892genetic_marker
Pisum_contig168556Pisum_contig168556genetic_marker
Pisum_contig021168Pisum_contig021168genetic_marker
Pisum_contig173876Pisum_contig173876genetic_marker
Pisum_contig085645Pisum_contig085645genetic_marker
Pisum_contig142449Pisum_contig142449genetic_marker
Pisum_contig182079Pisum_contig182079genetic_marker
Pisum_contig085666Pisum_contig085666genetic_marker
Pisum_contig153195Pisum_contig153195genetic_marker
Pisum_contig173873Pisum_contig173873genetic_marker
Pisum_contig026602Pisum_contig026602genetic_marker
Pisum_contig072661Pisum_contig072661genetic_marker
Pisum_contig085651Pisum_contig085651genetic_marker
Pisum_contig085657Pisum_contig085657genetic_marker
Pisum_contig142462Pisum_contig142462genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States