A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig060107Pisum_contig060107genetic_marker
Pisum_contig094319Pisum_contig094319genetic_marker
Pisum_contig184720Pisum_contig184720genetic_marker
Pisum_contig005178Pisum_contig005178genetic_marker
Pisum_contig015293Pisum_contig015293genetic_marker
Pisum_contig070646Pisum_contig070646genetic_marker
Pisum_contig102862Pisum_contig102862genetic_marker
Pisum_contig126634Pisum_contig126634genetic_marker
Pisum_contig131699Pisum_contig131699genetic_marker
Pisum_contig097211Pisum_contig097211genetic_marker
Pisum_contig176576Pisum_contig176576genetic_marker
Pisum_contig037058Pisum_contig037058genetic_marker
Pisum_contig086446Pisum_contig086446genetic_marker
Pisum_contig094316Pisum_contig094316genetic_marker
Pisum_contig094326Pisum_contig094326genetic_marker
Pisum_contig100323Pisum_contig100323genetic_marker
Pisum_contig173999Pisum_contig173999genetic_marker
Pisum_contig180551Pisum_contig180551genetic_marker
Pisum_contig014557Pisum_contig014557genetic_marker
Pisum_contig106433Pisum_contig106433genetic_marker
Pisum_contig176572Pisum_contig176572genetic_marker
Pisum_contig176580Pisum_contig176580genetic_marker
Pisum_contig192326Pisum_contig192326genetic_marker
Pisum_contig181620Pisum_contig181620genetic_marker
Pisum_contig150315Pisum_contig150315genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States