A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig173271Pisum_contig173271genetic_marker
Pisum_contig174673Pisum_contig174673genetic_marker
Pisum_contig178958Pisum_contig178958genetic_marker
Pisum_contig180526Pisum_contig180526genetic_marker
Pisum_contig181447Pisum_contig181447genetic_marker
Pisum_contig183633Pisum_contig183633genetic_marker
Pisum_contig184379Pisum_contig184379genetic_marker
Pisum_contig186652Pisum_contig186652genetic_marker
Pisum_contig186654Pisum_contig186654genetic_marker
Pisum_contig187546Pisum_contig187546genetic_marker
Pisum_contig188376Pisum_contig188376genetic_marker
Pisum_contig189296Pisum_contig189296genetic_marker
Pisum_contig190509Pisum_contig190509genetic_marker
Pisum_contig212673Pisum_contig212673genetic_marker
Pisum_contig009702Pisum_contig009702genetic_marker
Pisum_contig015035Pisum_contig015035genetic_marker
Pisum_contig017821Pisum_contig017821genetic_marker
Pisum_contig020503Pisum_contig020503genetic_marker
Pisum_contig031648Pisum_contig031648genetic_marker
Pisum_contig053481Pisum_contig053481genetic_marker
Pisum_contig064370Pisum_contig064370genetic_marker
Pisum_contig070474Pisum_contig070474genetic_marker
Pisum_contig102327Pisum_contig102327genetic_marker
Pisum_contig117319Pisum_contig117319genetic_marker
Pisum_contig127318Pisum_contig127318genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States