A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig001282Pisum_contig001282genetic_marker
Pisum_contig005377Pisum_contig005377genetic_marker
Pisum_contig005914Pisum_contig005914genetic_marker
Pisum_contig011261Pisum_contig011261genetic_marker
Pisum_contig013610Pisum_contig013610genetic_marker
Pisum_contig018553Pisum_contig018553genetic_marker
Pisum_contig042845Pisum_contig042845genetic_marker
Pisum_contig054345Pisum_contig054345genetic_marker
Pisum_contig054357Pisum_contig054357genetic_marker
Pisum_contig054371Pisum_contig054371genetic_marker
Pisum_contig055276Pisum_contig055276genetic_marker
Pisum_contig055930Pisum_contig055930genetic_marker
Pisum_contig074648Pisum_contig074648genetic_marker
Pisum_contig085632Pisum_contig085632genetic_marker
Pisum_contig098948Pisum_contig098948genetic_marker
Pisum_contig098952Pisum_contig098952genetic_marker
Pisum_contig123032Pisum_contig123032genetic_marker
Pisum_contig130153Pisum_contig130153genetic_marker
Pisum_contig134246Pisum_contig134246genetic_marker
Pisum_contig145946Pisum_contig145946genetic_marker
Pisum_contig148512Pisum_contig148512genetic_marker
Pisum_contig155880Pisum_contig155880genetic_marker
Pisum_contig157773Pisum_contig157773genetic_marker
Pisum_contig167035Pisum_contig167035genetic_marker
Pisum_contig169088Pisum_contig169088genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States