A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig074634Pisum_contig074634genetic_marker
Pisum_contig080345Pisum_contig080345genetic_marker
Pisum_contig080368Pisum_contig080368genetic_marker
Pisum_contig098936Pisum_contig098936genetic_marker
Pisum_contig106446Pisum_contig106446genetic_marker
Pisum_contig114451Pisum_contig114451genetic_marker
Pisum_contig131004Pisum_contig131004genetic_marker
Pisum_contig145667Pisum_contig145667genetic_marker
Pisum_contig146571Pisum_contig146571genetic_marker
Pisum_contig173495Pisum_contig173495genetic_marker
Pisum_contig018324Pisum_contig018324genetic_marker
Pisum_contig054120Pisum_contig054120genetic_marker
Pisum_contig054531Pisum_contig054531genetic_marker
Pisum_contig070045Pisum_contig070045genetic_marker
Pisum_contig074643Pisum_contig074643genetic_marker
Pisum_contig074646Pisum_contig074646genetic_marker
Pisum_contig074670Pisum_contig074670genetic_marker
Pisum_contig081340Pisum_contig081340genetic_marker
Pisum_contig087989Pisum_contig087989genetic_marker
Pisum_contig088003Pisum_contig088003genetic_marker
Pisum_contig176539Pisum_contig176539genetic_marker
Pisum_contig008252Pisum_contig008252genetic_marker
Pisum_contig066128Pisum_contig066128genetic_marker
Pisum_contig074666Pisum_contig074666genetic_marker
Pisum_contig005942Pisum_contig005942genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States