A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig009669Pisum_contig009669genetic_marker
Pisum_contig028171Pisum_contig028171genetic_marker
Pisum_contig042851Pisum_contig042851genetic_marker
Pisum_contig059507Pisum_contig059507genetic_marker
Pisum_contig092219Pisum_contig092219genetic_marker
Pisum_contig102072Pisum_contig102072genetic_marker
Pisum_contig114666Pisum_contig114666genetic_marker
Pisum_contig140402Pisum_contig140402genetic_marker
Pisum_contig142939Pisum_contig142939genetic_marker
Pisum_contig146726Pisum_contig146726genetic_marker
Pisum_contig169940Pisum_contig169940genetic_marker
Pisum_contig186040Pisum_contig186040genetic_marker
Pisum_contig191789Pisum_contig191789genetic_marker
Pisum_contig160943Pisum_contig160943genetic_marker
Pisum_contig186671Pisum_contig186671genetic_marker
Pisum_contig006033Pisum_contig006033genetic_marker
Pisum_contig006050Pisum_contig006050genetic_marker
Pisum_contig030420Pisum_contig030420genetic_marker
Pisum_contig030421Pisum_contig030421genetic_marker
Pisum_contig030425Pisum_contig030425genetic_marker
Pisum_contig030426Pisum_contig030426genetic_marker
Pisum_contig030428Pisum_contig030428genetic_marker
Pisum_contig030429Pisum_contig030429genetic_marker
Pisum_contig030433Pisum_contig030433genetic_marker
Pisum_contig030434Pisum_contig030434genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States