A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig205894Pisum_contig205894genetic_marker
Pisum_contig073276Pisum_contig073276genetic_marker
Pisum_contig104435Pisum_contig104435genetic_marker
Pisum_contig115369Pisum_contig115369genetic_marker
Pisum_contig151963Pisum_contig151963genetic_marker
Pisum_contig185746Pisum_contig185746genetic_marker
Pisum_contig196960Pisum_contig196960genetic_marker
Pisum_contig028888Pisum_contig028888genetic_marker
Pisum_contig051006Pisum_contig051006genetic_marker
Pisum_contig071617Pisum_contig071617genetic_marker
Pisum_contig073266Pisum_contig073266genetic_marker
Pisum_contig123591Pisum_contig123591genetic_marker
Pisum_contig043900Pisum_contig043900genetic_marker
Pisum_contig125789Pisum_contig125789genetic_marker
Pisum_contig071631Pisum_contig071631genetic_marker
Pisum_contig028877Pisum_contig028877genetic_marker
Pisum_contig028879Pisum_contig028879genetic_marker
Pisum_contig028880Pisum_contig028880genetic_marker
Pisum_contig030422Pisum_contig030422genetic_marker
Pisum_contig050501Pisum_contig050501genetic_marker
Pisum_contig071616Pisum_contig071616genetic_marker
Pisum_contig071628Pisum_contig071628genetic_marker
Pisum_contig071635Pisum_contig071635genetic_marker
Pisum_contig071638Pisum_contig071638genetic_marker
Pisum_contig073258Pisum_contig073258genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States