A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig071626Pisum_contig071626genetic_marker
Pisum_contig075077Pisum_contig075077genetic_marker
Pisum_contig077799Pisum_contig077799genetic_marker
Pisum_contig077813Pisum_contig077813genetic_marker
Pisum_contig077817Pisum_contig077817genetic_marker
Pisum_contig077818Pisum_contig077818genetic_marker
Pisum_contig083821Pisum_contig083821genetic_marker
Pisum_contig083823Pisum_contig083823genetic_marker
Pisum_contig083824Pisum_contig083824genetic_marker
Pisum_contig089579Pisum_contig089579genetic_marker
Pisum_contig093834Pisum_contig093834genetic_marker
Pisum_contig104347Pisum_contig104347genetic_marker
Pisum_contig104350Pisum_contig104350genetic_marker
Pisum_contig108797Pisum_contig108797genetic_marker
Pisum_contig121161Pisum_contig121161genetic_marker
Pisum_contig127987Pisum_contig127987genetic_marker
Pisum_contig127990Pisum_contig127990genetic_marker
Pisum_contig132286Pisum_contig132286genetic_marker
Pisum_contig132291Pisum_contig132291genetic_marker
Pisum_contig132297Pisum_contig132297genetic_marker
Pisum_contig159531Pisum_contig159531genetic_marker
Pisum_contig164316Pisum_contig164316genetic_marker
Pisum_contig176163Pisum_contig176163genetic_marker
Pisum_contig177770Pisum_contig177770genetic_marker
Pisum_contig183468Pisum_contig183468genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States