A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig015725Pisum_contig015725genetic_marker
Pisum_contig015727Pisum_contig015727genetic_marker
Pisum_contig023457Pisum_contig023457genetic_marker
Pisum_contig084345Pisum_contig084345genetic_marker
Pisum_contig121160Pisum_contig121160genetic_marker
Pisum_contig161321Pisum_contig161321genetic_marker
Pisum_contig127847Pisum_contig127847genetic_marker
Pisum_contig015723Pisum_contig015723genetic_marker
Pisum_contig015749Pisum_contig015749genetic_marker
Pisum_contig015754Pisum_contig015754genetic_marker
Pisum_contig016485Pisum_contig016485genetic_marker
Pisum_contig016501Pisum_contig016501genetic_marker
Pisum_contig016517Pisum_contig016517genetic_marker
Pisum_contig023458Pisum_contig023458genetic_marker
Pisum_contig023459Pisum_contig023459genetic_marker
Pisum_contig023468Pisum_contig023468genetic_marker
Pisum_contig023470Pisum_contig023470genetic_marker
Pisum_contig023471Pisum_contig023471genetic_marker
Pisum_contig023472Pisum_contig023472genetic_marker
Pisum_contig025230Pisum_contig025230genetic_marker
Pisum_contig027514Pisum_contig027514genetic_marker
Pisum_contig028172Pisum_contig028172genetic_marker
Pisum_contig037602Pisum_contig037602genetic_marker
Pisum_contig037603Pisum_contig037603genetic_marker
Pisum_contig037604Pisum_contig037604genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States