A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig147802Pisum_contig147802genetic_marker
Pisum_contig089082Pisum_contig089082genetic_marker
Pisum_contig091426Pisum_contig091426genetic_marker
Pisum_contig091436Pisum_contig091436genetic_marker
Pisum_contig095610Pisum_contig095610genetic_marker
Pisum_contig147798Pisum_contig147798genetic_marker
Pisum_contig087834Pisum_contig087834genetic_marker
Pisum_contig095606Pisum_contig095606genetic_marker
Pisum_contig130938Pisum_contig130938genetic_marker
Pisum_contig217662Pisum_contig217662genetic_marker
Pisum_contig103758Pisum_contig103758genetic_marker
Pisum_contig130933Pisum_contig130933genetic_marker
Pisum_contig142825Pisum_contig142825genetic_marker
Pisum_contig087808Pisum_contig087808genetic_marker
Pisum_contig189682Pisum_contig189682genetic_marker
Pisum_contig087812Pisum_contig087812genetic_marker
Pisum_contig103756Pisum_contig103756genetic_marker
Pisum_contig130920Pisum_contig130920genetic_marker
Pisum_contig130927Pisum_contig130927genetic_marker
Pisum_contig130928Pisum_contig130928genetic_marker
Pisum_contig130932Pisum_contig130932genetic_marker
Pisum_contig130936Pisum_contig130936genetic_marker
Pisum_contig130937Pisum_contig130937genetic_marker
Pisum_contig142818Pisum_contig142818genetic_marker
Pisum_contig142828Pisum_contig142828genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States